RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 OR52A4PA6NMU1 304 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 FOXI3A8MTJ6 420 aaPredicted RBP1.64□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF705EA8MWA4 302 aaPredicted RBP1.64□□□□□ -2.15
HMGB1-208ENST00000490788 EFCAB9A8MZ26 197 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 TRDCB7Z8K6 153 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 C5orf58C9J3I9 102 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 F6UZH7 168 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 H3BN98 237 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 M0R036 132 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 DLGAP1O14490 977 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 BCKDKO14874 412 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 AZIN1O14977 448 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 CHADO15335 359 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 CCL25O15444 150 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 SYT7O43581 403 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 KLRC4O43908 158 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 TYROBPO43914 113 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 FAM189A1O60320 539 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 SLC19A2O60779 497 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 RAMP3O60896 148 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 GGCTO75223 188 aaKnown RBP1.64□□□□□ -2.15
HMGB1-208ENST00000490788 CSO75390 466 aaKnown RBP1.64□□□□□ -2.15
HMGB1-208ENST00000490788 RP2O75695 350 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 PIAS1O75925 651 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 ANXA9O76027 345 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 LY6G6DO95868 133 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 IFNA17P01571 189 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 IGHV2-5P01817 119 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 PIGRP01833 764 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 TRBC1P01850 177 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 TCRBP04435 133 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 FCGR3AP08637 254 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 CSF3P09919 207 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 ALPIP09923 528 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 IL1RNP18510 177 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 RCC1P18754 421 aaPredicted RBP1.64□□□□□ -2.15
HMGB1-208ENST00000490788 FUT1P19526 365 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 TBPP20226 339 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 GSTM3P21266 225 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 GPX3P22352 226 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 GABRR1P24046 479 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 NFYBP25208 207 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 PSMB9P28065 219 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 PSMB5P28074 263 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 CALCRP30988 508 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 MAS1LP35410 378 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 ETV6P41212 452 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 IDH2P48735 452 aaKnown RBP1.64□□□□□ -2.15
HMGB1-208ENST00000490788 ARRB1P49407 418 aaPredicted RBP1.64□□□□□ -2.15
HMGB1-208ENST00000490788 TNFSF10P50591 281 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 RAB9AP51151 201 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 DUSP3P51452 185 aaPredicted RBP1.64□□□□□ -2.15
HMGB1-208ENST00000490788 SNU13P55769 128 aaKnown RBP1.64□□□□□ -2.15
HMGB1-208ENST00000490788 NDUFA6P56556 154 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 DAOAP59103 153 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 TAS2R39P59534 338 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 LYZP61626 148 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 CSNK1G2P78368 415 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 BTG2P78543 158 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 HMGCS1Q01581 520 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 EMX2Q04743 252 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 GABPAQ06546 454 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 ARHGAP1Q07960 439 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 CD47Q08722 323 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 OR5I1Q13606 314 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 RAB31Q13636 194 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 IL18Q14116 193 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 SLC10A1Q14973 349 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 ABRAXAS2Q15018 415 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 OR4D1Q15615 310 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 BATFQ16520 125 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 BSXQ3C1V8 233 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 TIMM50Q3ZCQ8 353 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 CYBRD1Q53TN4 286 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 MESTQ5EB52 335 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 CARD16Q5EG05 197 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 FAM78AQ5JUQ0 283 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 AKR1C8PQ5T2L2 129 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 C1orf189Q5VU69 101 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 SDHAF4Q5VUM1 108 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF691Q5VV52 312 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 LIPKQ5VXJ0 399 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 GLYATQ6IB77 296 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 REEP3Q6NUK4 255 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 SLC39A4Q6P5W5 647 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 SMARCD3Q6STE5 483 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 C16orf47Q6ZP98 133 aaPredicted RBP1.64□□□□□ -2.15
HMGB1-208ENST00000490788 SLC35D2Q76EJ3 337 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 LYG2Q86SG7 212 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 YRDCQ86U90 279 aaKnown RBP1.64□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM135Q86UB9 458 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 UNC93AQ86WB7 457 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 RBM45Q8IUH3 476 aaKnown RBP1.64□□□□□ -2.15
HMGB1-208ENST00000490788 FUNDC1Q8IVP5 155 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 C10orf107Q8IVU9 208 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 SIAH3Q8IW03 269 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 PDZD9Q8IXQ8 264 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 CMTM1Q8IZ96 169 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 DAW1Q8N136 415 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 SVBPQ8N300 66 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms