RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 FIGNL2A6NMB9 653 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 WDR1O75083 606 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 LYZL6O75951 148 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 GNB3P16520 340 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 IGHV1-2P23083 117 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 OR8B8Q15620 311 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 C1orf185Q5T7R7 199 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 C1QL2Q7Z5L3 287 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 TRAPPC6BQ86SZ2 158 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 ZNF610Q8N9Z0 462 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 ADAD2Q8NCV1 583 aaKnown RBP10.48□□□□□ -0.73
HDAC6-230ENST00000488543 TMEM104Q8NE00 496 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 MBD3L2Q8NHZ7 208 aaPredicted RBP10.48□□□□□ -0.73
HDAC6-230ENST00000488543 PIGTQ969N2 578 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 STARD4Q96DR4 205 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 NICN1Q9BSH3 213 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 PDCD10Q9BUL8 212 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 CST11Q9H112 138 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 LPAR5Q9H1C0 372 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 OPN3Q9H1Y3 402 aaPredicted RBP10.48□□□□□ -0.73
HDAC6-230ENST00000488543 PPA2Q9H2U2 334 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 POLEQ07864 2286 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 A0A0A6YYD4 124 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 XRCC2O43543 280 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 C4BPBP20851 252 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 CD34P28906 385 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 LUMP51884 338 aaPredicted RBP10.48□□□□□ -0.73
HDAC6-230ENST00000488543 ACTBP60709 375 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 ACTG1P63261 375 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 PPP1R1AQ13522 171 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 DPPA2Q7Z7J5 298 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 BVESQ8NE79 360 aa10.48□□□□□ -0.73
HDAC6-230ENST00000488543 A0A1W2PP11 408 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 C5orf49A4QMS7 147 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 OR5H14A6NHG9 310 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 APOC3P02656 99 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 ALDH3B1P43353 468 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 AKR1C2P52895 323 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 AKR1C1Q04828 323 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 ZNF260Q3ZCT1 412 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 KCTD9Q7L273 389 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 MDP1Q86V88 176 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 ZNF101Q8IZC7 436 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 TMEM229BQ8NBD8 167 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 ST8SIA2Q92186 375 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 AQP3Q92482 292 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 MRPS24Q96EL2 167 aaKnown RBP10.47□□□□□ -0.73
HDAC6-230ENST00000488543 GPER1Q99527 375 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 C12orf4Q9NQ89 552 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 IGSF10Q6WRI0 2623 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 TMEM8BA6NDV4 472 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 RFPL4AA6NLU0 287 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 A8MXK9 166 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 RFPL4AL1F8VTS6 287 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 H3BUI4 141 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 PRRG2O14669 202 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 CDC14BO60729 498 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 RAD51DO75771 328 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 CGAP01215 116 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 IL2RAP01589 272 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 GLI4P10075 376 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 AKR1C4P17516 323 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 PTGFRP43088 359 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 OR2A2Q6IF42 318 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 PDZD9Q8IXQ8 264 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 OR5D18Q8NGL1 313 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 FN3KRPQ9HA64 309 aa10.47□□□□□ -0.73
HDAC6-230ENST00000488543 IGKV1-27A0A075B6S5 117 aa10.46□□□□□ -0.73
HDAC6-230ENST00000488543 METTL21EPA6NDL7 271 aa10.46□□□□□ -0.73
HDAC6-230ENST00000488543 OR2AT4A6NND4 320 aa10.46□□□□□ -0.73
HDAC6-230ENST00000488543 EEF1E1-BLOC1S5C9J1V9 151 aa10.46□□□□□ -0.73
HDAC6-230ENST00000488543 SULT1C2O00338 296 aa10.46□□□□□ -0.73
HDAC6-230ENST00000488543 PMP2P02689 132 aa10.46□□□□□ -0.73
HDAC6-230ENST00000488543 FGF2P09038 288 aa10.46□□□□□ -0.73
HDAC6-230ENST00000488543 UBBP0CG47 229 aa10.46□□□□□ -0.73
HDAC6-230ENST00000488543 HRH1P35367 487 aa10.46□□□□□ -0.73
HDAC6-230ENST00000488543 CLVS2Q5SYC1 327 aa10.46□□□□□ -0.73
HDAC6-230ENST00000488543 RAB12Q6IQ22 244 aa10.46□□□□□ -0.73
HDAC6-230ENST00000488543 OR10K1Q8NGX5 313 aa10.46□□□□□ -0.73
HDAC6-230ENST00000488543 OR6K3Q8NGY3 331 aa10.46□□□□□ -0.73
HDAC6-230ENST00000488543 SPSB1Q96BD6 273 aa10.46□□□□□ -0.73
HDAC6-230ENST00000488543 VRK1Q99986 396 aaPredicted RBP10.46□□□□□ -0.73
HDAC6-230ENST00000488543 SHARPINQ9H0F6 387 aa10.46□□□□□ -0.73
HDAC6-230ENST00000488543 BANF2Q9H503 90 aa10.46□□□□□ -0.73
HDAC6-230ENST00000488543 PLSCR4Q9NRQ2 329 aa10.46□□□□□ -0.73
HDAC6-230ENST00000488543 SESN1Q9Y6P5 492 aa10.46□□□□□ -0.73
HDAC6-230ENST00000488543 EPG5Q9HCE0 2579 aa10.46□□□□□ -0.74
HDAC6-230ENST00000488543 ATP6V1G2-DDX39BF2Z307 99 aa10.46□□□□□ -0.74
HDAC6-230ENST00000488543 MPIG6BO95866 241 aa10.46□□□□□ -0.74
HDAC6-230ENST00000488543 RPA2P15927 270 aa10.46□□□□□ -0.74
HDAC6-230ENST00000488543 PI3P19957 117 aa10.46□□□□□ -0.74
HDAC6-230ENST00000488543 CCNOP22674 350 aa10.46□□□□□ -0.74
HDAC6-230ENST00000488543 WNT5AP41221 380 aa10.46□□□□□ -0.74
HDAC6-230ENST00000488543 GMFBP60983 142 aa10.46□□□□□ -0.74
HDAC6-230ENST00000488543 PLP2Q04941 152 aa10.46□□□□□ -0.74
HDAC6-230ENST00000488543 UNQ6126/PRO20091Q6UXV3 157 aa10.46□□□□□ -0.74
HDAC6-230ENST00000488543 Q6ZT83 130 aa10.46□□□□□ -0.74
HDAC6-230ENST00000488543 OR5M8Q8NGP6 311 aa10.46□□□□□ -0.74
HDAC6-230ENST00000488543 KCNG3Q8TAE7 436 aa10.46□□□□□ -0.74
HDAC6-230ENST00000488543 PPP1R1CQ8WVI7 109 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms