RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 AWAT2Q6E213 333 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 Q6ZS46 218 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 FAM90A1Q86YD7 464 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 ANKRD13BQ86YJ7 626 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 BATF2Q8N1L9 274 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 C19orf18Q8NEA5 215 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 EMG1Q92979 244 aaKnown RBP8.63□□□□□ -1.03
SKA1-204ENST00000488454 C12orf43Q96C57 262 aaKnown RBP8.63□□□□□ -1.03
SKA1-204ENST00000488454 ZNF488Q96MN9 340 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 NRIP2Q9BQI9 281 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 CENPOQ9BU64 300 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 NARFLQ9H6Q4 476 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 TMEM165Q9HC07 324 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 NLKQ9UBE8 527 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 GHRLQ9UBU3 117 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 MIOXQ9UGB7 285 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 MRPS28Q9Y2Q9 187 aaKnown RBP8.63□□□□□ -1.03
SKA1-204ENST00000488454 ANKRD17O75179 2603 aaKnown RBP8.63□□□□□ -1.03
SKA1-204ENST00000488454 OR2AT4A6NND4 320 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 KDM4BO94953 1096 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 CDRT1O95170 752 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 HTR3BO95264 441 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 GYPAP02724 150 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 UBBP0CG47 229 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 PRKACAP17612 351 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 EGR1P18146 543 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 ADRA2CP18825 462 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 BCL3P20749 454 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 CPT2P23786 658 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 HTR2CP28335 458 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 SDC2P34741 201 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 GABRA2P47869 451 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 NPBWR2P48146 333 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 ZNF404Q494X3 552 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 SLC22A6Q4U2R8 563 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 GLIPR1L1Q6UWM5 242 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 ACP7Q6ZNF0 438 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 DCDC5Q6ZRR9 648 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 NLRC3Q7RTR2 1065 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 RNF144BQ7Z419 303 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 KRTAP1-3Q8IUG1 177 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 CLVS1Q8IUQ0 354 aaPredicted RBP8.62□□□□□ -1.03
SKA1-204ENST00000488454 FAM58AQ8N1B3 248 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 OR5T2Q8NGG2 359 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 OR6M1Q8NGM8 313 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 RAB39BQ96DA2 213 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 MED30Q96HR3 178 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 DMRTB1Q96MA1 342 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 NKX3-1Q99801 234 aaPredicted RBP8.62□□□□□ -1.03
SKA1-204ENST00000488454 TMEM246Q9BRR3 403 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 WDR13Q9H1Z4 485 aa8.62□□□□□ -1.03
SKA1-204ENST00000488454 CSMD2Q7Z408 3487 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 IGHV4-61A0A0C4DH41 118 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 IGKV1-12A0A0C4DH73 117 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 NKX6-3A6NJ46 265 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 RFPL4AA6NLU0 287 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 RFPL4AL1F8VTS6 287 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 ADAM20O43506 726 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 KNG1P01042 644 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 IGKV1D-12P01611 117 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 GTF2F2P13984 249 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 PRDX2P32119 198 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 CAPZA1P52907 286 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 ERVK11-1P61568 191 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 HOXA4Q00056 320 aaPredicted RBP8.61□□□□□ -1.03
SKA1-204ENST00000488454 MXD1Q05195 221 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 LOXL1Q08397 574 aaPredicted RBP8.61□□□□□ -1.03
SKA1-204ENST00000488454 RAB11BQ15907 218 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 C1orf100Q5SVJ3 147 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 ASCL4Q6XD76 172 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 SLC36A1Q7Z2H8 476 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 C1QL2Q7Z5L3 287 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 OR8B3Q8NGG8 313 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 OR4D6Q8NGJ1 314 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 CLDND2Q8NHS1 167 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 TBC1D15Q8TC07 691 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 SEH1LQ96EE3 360 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 OR8B2Q96RD0 313 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 RNF167Q9H6Y7 350 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 ZNF665Q9H7R5 613 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 LIN7BQ9HAP6 207 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 HES4Q9HCC6 221 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 HMG20AQ9NP66 347 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 RBFOX1Q9NWB1 397 aaKnown RBP8.61□□□□□ -1.03
SKA1-204ENST00000488454 OR14J1Q9UGF5 321 aa8.61□□□□□ -1.03
SKA1-204ENST00000488454 TEP1Q99973 2627 aaKnown RBP8.61□□□□□ -1.03
SKA1-204ENST00000488454 PRRC2AP48634 2157 aaKnown RBP8.61□□□□□ -1.03
SKA1-204ENST00000488454 DYSFO75923 2080 aa8.6□□□□□ -1.03
SKA1-204ENST00000488454 CCDC160A6NGH7 325 aa8.6□□□□□ -1.03
SKA1-204ENST00000488454 IFITM5A6NNB3 132 aa8.6□□□□□ -1.03
SKA1-204ENST00000488454 CEACAM18A8MTB9 384 aa8.6□□□□□ -1.03
SKA1-204ENST00000488454 NOTOA8MTQ0 251 aa8.6□□□□□ -1.03
SKA1-204ENST00000488454 F8VVB4 439 aa8.6□□□□□ -1.03
SKA1-204ENST00000488454 F8VWA3 439 aa8.6□□□□□ -1.03
SKA1-204ENST00000488454 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.6□□□□□ -1.03
SKA1-204ENST00000488454 H7C1Q1 480 aa8.6□□□□□ -1.03
SKA1-204ENST00000488454 SLC17A2O00624 439 aa8.6□□□□□ -1.03
SKA1-204ENST00000488454 SH2D1BO14796 132 aa8.6□□□□□ -1.03
SKA1-204ENST00000488454 SMAD7O15105 426 aaKnown RBP8.6□□□□□ -1.03
SKA1-204ENST00000488454 SLC22A1O15245 554 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms