RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 ZNF609O15014 1411 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 EDIL3O43854 480 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 FKBP6O75344 327 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 RDH16O75452 317 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 AMBPP02760 352 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 ZNF250P15622 560 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 RAB5AP20339 215 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 CD34P28906 385 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 S100A11P31949 105 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 OR1D4P47884 311 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 RAB5BP61020 215 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 ZNF85Q03923 595 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 BIKQ13323 160 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 DUSP5Q16690 384 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 MICAQ29983 383 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 ACOT6Q3I5F7 207 aaPredicted RBP3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 FHL5Q5TD97 284 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 TRNP1Q6NT89 227 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 DCUN1D2Q6PH85 259 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 XKRXQ6PP77 449 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 C19orf48Q6RUI8 117 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 SCIMPQ6UWF3 145 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 ADAMTSL5Q6ZMM2 481 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 TMPPEQ6ZT21 453 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 PIWIL4Q7Z3Z4 852 aaKnown RBP3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 IFNEQ86WN2 208 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 ZNF567Q8N184 647 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 GAPTQ8N292 157 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 ZNF485Q8NCK3 441 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 MCFD2Q8NI22 146 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 SLC37A2Q8TED4 501 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 TRUB1Q8WWH5 349 aaKnown RBP3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 EEF1AKMT3Q96AZ1 226 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 GALMQ96C23 342 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 TM4SF18Q96CE8 201 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 SORT1Q99523 831 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 CDX2Q99626 313 aaPredicted RBP3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 SLC25A39Q9BZJ4 359 aaPredicted RBP3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 VCXQ9H320 206 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 Q9HAA7 133 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 MEPEQ9NQ76 525 aaPredicted RBP3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 THYN1Q9P016 225 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 TAAR2Q9P1P5 351 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 DNAJC12Q9UKB3 198 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 OVOS2A0A0J9YW53 1432 aa3.9□□□□□ -1.78
CCDC88A-210ENST00000468534 WRNQ14191 1432 aaPredicted RBP eCLIP3.9□□□□□ -1.78
CCDC88A-210ENST00000468534 OVOS2Q6IE36 1432 aa3.9□□□□□ -1.78
CCDC88A-210ENST00000468534 A0A087WX48 190 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 A0A087WZ39 114 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 FAM240AA0A1B0GVK7 77 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 OR5H15A6NDH6 313 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 GLTPD2A6NH11 291 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 OR5H1A6NKK0 313 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 FAM72CH0Y354 149 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 K7ERU9 68 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 FAAHO00519 579 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 GABRPO00591 440 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 GGCTO75223 188 aaKnown RBP3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 GCM2O75603 506 aaPredicted RBP3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 C1QBP02746 253 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 EDN1P05305 212 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 HOXB7P09629 217 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 OR8U8P0C7N1 319 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 IGHV4-31P0DP07 118 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 CD99P14209 185 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 PTGDSP41222 190 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 REG1BP48304 166 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 FABP6P51161 128 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 RIPPLY3P57055 190 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 LINC01547P58512 204 aaPredicted RBP3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 SNRPD1P62314 119 aaKnown RBP3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 EMX1Q04741 257 aaPredicted RBP3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 OR8G1Q15617 311 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 ZNF726P1Q15940 193 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 FAM120AOSQ5T036 256 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 TPTE2P1Q5T6R2 138 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 FAM162BQ5T6X4 162 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 FAM72AQ5TYM5 149 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 OR10K2Q6IF99 312 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 FAM72DQ6L9T8 149 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 TBPL2Q6SJ96 375 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 Q6ZVQ6 151 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 PRSS48Q7RTY5 328 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 FAM72BQ86X60 149 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 ODF3L1Q8IXM7 274 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 PIANPQ8IYJ0 282 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 SLC35F6Q8N357 371 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 MUC15Q8N387 334 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 MAPKAPK5-AS1Q8N8E1 139 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 OR10G4Q8NGN3 311 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 OR1J1Q8NGS3 322 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 OR2G2Q8NGZ5 317 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 ARPC1AQ92747 370 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 APOBEC3DQ96AK3 386 aaPredicted RBP3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 DIRAS2Q96HU8 199 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 NARS2Q96I59 477 aaKnown RBP3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 CAPZA3Q96KX2 299 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 PGLYRP3Q96LB9 341 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 FAM173AQ9BQD7 235 aa3.9□□□□□ -1.79
CCDC88A-210ENST00000468534 GFRA4Q9GZZ7 299 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms