RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 ZNF879B4DU55 563 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 C3orf80F5H4A9 247 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 TRAPPC2LH3BP13 241 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 AKR7A2O43488 359 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 OCMP0CE72 109 aaPredicted RBP9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 HSMCR30P0CW71 290 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 MUC1P15941 1255 aaPredicted RBP9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 CPEP16870 476 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 MPZP25189 248 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 ATP1B3P54709 279 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 IL24Q13007 206 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 TPBGQ13641 420 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 SLC9A3R2Q15599 337 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 SFRP4Q6FHJ7 346 aaPredicted RBP9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 ZNF529Q6P280 563 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 ZNF773Q6PK81 442 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 BRICD5Q6PL45 260 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 DCDC5Q6ZRR9 648 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 ANGPTL5Q86XS5 388 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 CALHM1Q8IU99 346 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 SPARTQ8N0X7 666 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 MS4A15Q8N5U1 240 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 KIR3DL3Q8N743 410 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 POC1AQ8NBT0 407 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 DEFB108BQ8NET1 73 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 ZNF48Q96MX3 618 aaPredicted RBP9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 OR14A2Q96R54 314 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 MGLLQ99685 303 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 MMP26Q9NRE1 261 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 TAS2R4Q9NYW5 299 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 ZNF69Q9UC07 566 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 NUP50Q9UKX7 468 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 INSIG2Q9Y5U4 225 aa9.87□□□□□ -0.83
SQSTM1-206ENST00000466342 IGHV3OR15-7A0A075B7D8 119 aa9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 TRBV5-7A0A0A0MS05 114 aa9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 NOS1APO75052 506 aaPredicted RBP9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 HCKP08631 526 aa9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 PGA5P0DJD9 388 aa9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 RPS2P15880 293 aaKnown RBP9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 FSTP19883 344 aa9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 RAB3AP20336 220 aa9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 GLRA1P23415 457 aa9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 MAPK3P27361 379 aaPredicted RBP9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 MTCP1P56278 107 aa9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 SEC61A1P61619 476 aaKnown RBP9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 PPP3R1P63098 170 aa9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 MICBQ29980 383 aa9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 VAX1Q5SQQ9 334 aa9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 LIPKQ5VXJ0 399 aa9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 C16orf87Q6PH81 154 aa9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 FAM90A1Q86YD7 464 aa9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 OR51A2Q8NGJ7 313 aa9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 FCGR1BQ92637 280 aa9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 C12orf43Q96C57 262 aaKnown RBP9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 NEIL1Q96FI4 390 aaPredicted RBP9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 DERL3Q96Q80 235 aa9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 TMED9Q9BVK6 235 aa9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 WDR13Q9H1Z4 485 aa9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 BEX1Q9HBH7 125 aa9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 AUP1Q9Y679 476 aa9.86□□□□□ -0.83
SQSTM1-206ENST00000466342 PLXNB1O43157 2135 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 TNFRSF13BO14836 293 aaPredicted RBP9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 NDUFA2O43678 99 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 GPX5O75715 221 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 SC5DO75845 299 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 TNFAIP8O95379 198 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 PLATP00750 562 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 GYPAP02724 150 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 ACAA1P09110 424 aaPredicted RBP9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 PPIAL4GP0DN37 164 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 IGFBP3P17936 291 aaPredicted RBP9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 POU3F4P49335 361 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 GMFBP60983 142 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 PAX8Q06710 450 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 TRAM1Q15629 374 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 UBE2UQ5VVX9 321 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 CRIP3Q6Q6R5 217 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 UNQ9370/PRO34162Q6UXP9 181 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 SLC25A26Q70HW3 274 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 NLRC3Q7RTR2 1065 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 BCL6BQ8N143 479 aaPredicted RBP9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 OR8B3Q8NGG8 313 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 ORAI1Q96D31 301 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 SEH1LQ96EE3 360 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 CPNE2Q96FN4 548 aaPredicted RBP9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 SPACA5Q96QH8 159 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 OR8B2Q96RD0 313 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 NRIP2Q9BQI9 281 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 MRI1Q9BV20 369 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 SSBP3Q9BWW4 388 aaPredicted RBP9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 HES4Q9HCC6 221 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 TMEM138Q9NPI0 162 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 RASL12Q9NYN1 266 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 NLKQ9UBE8 527 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 CKLFQ9UBR5 152 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 DNAJB11Q9UBS4 358 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 OR5V1Q9UGF6 321 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 FOXJ3Q9UPW0 622 aa9.85□□□□□ -0.83
SQSTM1-206ENST00000466342 TRAV8-7A0A075B6U6 113 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 A0A1W2PPK0 400 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms