RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 BCL3P20749 454 aa15.4■□□□□ 0.06
USP39-209ENST00000458268 UBA52P62987 128 aaKnown RBP15.4■□□□□ 0.06
USP39-209ENST00000458268 COL10A1Q03692 680 aa15.4■□□□□ 0.06
USP39-209ENST00000458268 ST3GAL4Q11206 333 aa15.4■□□□□ 0.06
USP39-209ENST00000458268 KLRD1Q13241 179 aa15.4■□□□□ 0.06
USP39-209ENST00000458268 PDCD1Q15116 288 aa15.4■□□□□ 0.06
USP39-209ENST00000458268 DEFB112Q30KQ8 113 aa15.4■□□□□ 0.06
USP39-209ENST00000458268 LHFPL2Q6ZUX7 228 aa15.4■□□□□ 0.06
USP39-209ENST00000458268 UTS2BQ765I0 119 aa15.4■□□□□ 0.06
USP39-209ENST00000458268 STX19Q8N4C7 294 aa15.4■□□□□ 0.06
USP39-209ENST00000458268 GGHQ92820 318 aa15.4■□□□□ 0.06
USP39-209ENST00000458268 ZCCHC4Q9H5U6 513 aa15.4■□□□□ 0.06
USP39-209ENST00000458268 IL36RNQ9UBH0 155 aa15.4■□□□□ 0.06
USP39-209ENST00000458268 DIMT1Q9UNQ2 313 aaKnown RBP15.4■□□□□ 0.06
USP39-209ENST00000458268 NOS1APO75052 506 aaPredicted RBP15.39■□□□□ 0.05
USP39-209ENST00000458268 RPSAP08865 295 aaKnown RBP15.39■□□□□ 0.05
USP39-209ENST00000458268 PRKACAP17612 351 aa15.39■□□□□ 0.05
USP39-209ENST00000458268 DUSP1P28562 367 aa15.39■□□□□ 0.05
USP39-209ENST00000458268 AQP4P55087 323 aa15.39■□□□□ 0.05
USP39-209ENST00000458268 CAV3P56539 151 aa15.39■□□□□ 0.05
USP39-209ENST00000458268 FIP1L1Q6UN15 594 aaKnown RBP15.39■□□□□ 0.05
USP39-209ENST00000458268 RNF144BQ7Z419 303 aa15.39■□□□□ 0.05
USP39-209ENST00000458268 MKXQ8IYA7 352 aa15.39■□□□□ 0.05
USP39-209ENST00000458268 LY6G5BQ8NDX9 201 aa15.39■□□□□ 0.05
USP39-209ENST00000458268 SDSLQ96GA7 329 aa15.39■□□□□ 0.05
USP39-209ENST00000458268 C19orf12Q9NSK7 152 aa15.39■□□□□ 0.05
USP39-209ENST00000458268 RBFOX1Q9NWB1 397 aaKnown RBP15.39■□□□□ 0.05
USP39-209ENST00000458268 KPTNQ9Y664 436 aa15.39■□□□□ 0.05
USP39-209ENST00000458268 IGHV1-69DA0A0B4J2H0 117 aa15.38■□□□□ 0.05
USP39-209ENST00000458268 EFCAB10A6NFE3 127 aa15.38■□□□□ 0.05
USP39-209ENST00000458268 KNG1P01042 644 aa15.38■□□□□ 0.05
USP39-209ENST00000458268 IGHV1-69P01742 117 aa15.38■□□□□ 0.05
USP39-209ENST00000458268 NPBWR2P48146 333 aa15.38■□□□□ 0.05
USP39-209ENST00000458268 EDDM3BP56851 147 aa15.38■□□□□ 0.05
USP39-209ENST00000458268 BLMHQ13867 455 aa15.38■□□□□ 0.05
USP39-209ENST00000458268 CDK5R1Q15078 307 aa15.38■□□□□ 0.05
USP39-209ENST00000458268 RPL22L1Q6P5R6 122 aaKnown RBP15.38■□□□□ 0.05
USP39-209ENST00000458268 SATL1Q86VE3 508 aa15.38■□□□□ 0.05
USP39-209ENST00000458268 ZNF561Q8N587 486 aa15.38■□□□□ 0.05
USP39-209ENST00000458268 DNAAF1Q8NEP3 725 aa15.38■□□□□ 0.05
USP39-209ENST00000458268 OR13C5Q8NGS8 318 aa15.38■□□□□ 0.05
USP39-209ENST00000458268 NRG4Q8WWG1 115 aa15.38■□□□□ 0.05
USP39-209ENST00000458268 GCDHQ92947 438 aaPredicted RBP15.38■□□□□ 0.05
USP39-209ENST00000458268 SPSB1Q96BD6 273 aa15.38■□□□□ 0.05
USP39-209ENST00000458268 GPER1Q99527 375 aa15.38■□□□□ 0.05
USP39-209ENST00000458268 JAM3Q9BX67 310 aa15.38■□□□□ 0.05
USP39-209ENST00000458268 TAS2R4Q9NYW5 299 aa15.38■□□□□ 0.05
USP39-209ENST00000458268 HSPE1-MOB4S4R3N1 261 aa15.38■□□□□ 0.05
USP39-209ENST00000458268 MYL12BO14950 172 aa15.37■□□□□ 0.05
USP39-209ENST00000458268 SULT1B1O43704 296 aa15.37■□□□□ 0.05
USP39-209ENST00000458268 LALBAP00709 142 aa15.37■□□□□ 0.05
USP39-209ENST00000458268 GABRR1P24046 479 aa15.37■□□□□ 0.05
USP39-209ENST00000458268 ERVK11-1P61568 191 aa15.37■□□□□ 0.05
USP39-209ENST00000458268 RPL31P62899 125 aaKnown RBP15.37■□□□□ 0.05
USP39-209ENST00000458268 EDDM3AQ14507 147 aa15.37■□□□□ 0.05
USP39-209ENST00000458268 C11orf91Q3C1V1 193 aa15.37■□□□□ 0.05
USP39-209ENST00000458268 C12orf54Q6X4T0 127 aa15.37■□□□□ 0.05
USP39-209ENST00000458268 SERPINA12Q8IW75 414 aa15.37■□□□□ 0.05
USP39-209ENST00000458268 FAM58AQ8N1B3 248 aa15.37■□□□□ 0.05
USP39-209ENST00000458268 PNKDQ8N490 385 aa15.37■□□□□ 0.05
USP39-209ENST00000458268 OR5D14Q8NGL3 314 aa15.37■□□□□ 0.05
USP39-209ENST00000458268 RGP1Q92546 391 aaPredicted RBP15.37■□□□□ 0.05
USP39-209ENST00000458268 NKX3-1Q99801 234 aaPredicted RBP15.37■□□□□ 0.05
USP39-209ENST00000458268 HES4Q9HCC6 221 aa15.37■□□□□ 0.05
USP39-209ENST00000458268 BABAM2Q9NXR7 383 aa15.37■□□□□ 0.05
USP39-209ENST00000458268 GSTK1Q9Y2Q3 226 aa15.37■□□□□ 0.05
USP39-209ENST00000458268 SIRT4Q9Y6E7 314 aaPredicted RBP15.37■□□□□ 0.05
USP39-209ENST00000458268 SIRPB1O00241 398 aa15.36■□□□□ 0.05
USP39-209ENST00000458268 HOXA3O43365 443 aaPredicted RBP15.36■□□□□ 0.05
USP39-209ENST00000458268 HAND1O96004 215 aa15.36■□□□□ 0.05
USP39-209ENST00000458268 TK1P04183 234 aa15.36■□□□□ 0.05
USP39-209ENST00000458268 CD2P06729 351 aa15.36■□□□□ 0.05
USP39-209ENST00000458268 TMEM225BP0DP42 221 aa15.36■□□□□ 0.05
USP39-209ENST00000458268 SCN1BQ07699 218 aa15.36■□□□□ 0.05
USP39-209ENST00000458268 PDZK1IP1Q13113 114 aa15.36■□□□□ 0.05
USP39-209ENST00000458268 KIR3DL3Q8N743 410 aa15.36■□□□□ 0.05
USP39-209ENST00000458268 C8orf46Q8TAG6 207 aa15.36■□□□□ 0.05
USP39-209ENST00000458268 HAVCR2Q8TDQ0 301 aa15.36■□□□□ 0.05
USP39-209ENST00000458268 GPR148Q8TDV2 347 aa15.36■□□□□ 0.05
USP39-209ENST00000458268 ORAI1Q96D31 301 aa15.36■□□□□ 0.05
USP39-209ENST00000458268 FAM192AQ9GZU8 254 aa15.36■□□□□ 0.05
USP39-209ENST00000458268 CHST6Q9GZX3 395 aa15.36■□□□□ 0.05
USP39-209ENST00000458268 TRBV23-1A0A0A0MS06 115 aa15.35■□□□□ 0.05
USP39-209ENST00000458268 A0A0U1RQK1 487 aa15.35■□□□□ 0.05
USP39-209ENST00000458268 HAX1O00165 279 aa15.35■□□□□ 0.05
USP39-209ENST00000458268 MAGEB3O15480 346 aa15.35■□□□□ 0.05
USP39-209ENST00000458268 CHRM2P08172 466 aa15.35■□□□□ 0.05
USP39-209ENST00000458268 RAB3AP20336 220 aa15.35■□□□□ 0.05
USP39-209ENST00000458268 PRTN3P24158 256 aa15.35■□□□□ 0.05
USP39-209ENST00000458268 EEF1B2P24534 225 aaKnown RBP15.35■□□□□ 0.05
USP39-209ENST00000458268 LAIR2Q6ISS4 152 aa15.35■□□□□ 0.05
USP39-209ENST00000458268 C9orf139Q6ZV77 190 aa15.35■□□□□ 0.05
USP39-209ENST00000458268 GDPD3Q7L5L3 318 aa15.35■□□□□ 0.05
USP39-209ENST00000458268 Q8IYB0 196 aa15.35■□□□□ 0.05
USP39-209ENST00000458268 Q8N7P7 452 aa15.35■□□□□ 0.05
USP39-209ENST00000458268 OR51A2Q8NGJ7 313 aa15.35■□□□□ 0.05
USP39-209ENST00000458268 FAM216AQ8WUB2 273 aa15.35■□□□□ 0.05
USP39-209ENST00000458268 ZFAND2BQ8WV99 257 aa15.35■□□□□ 0.05
USP39-209ENST00000458268 TFAP2CQ92754 450 aa15.35■□□□□ 0.05
USP39-209ENST00000458268 TAF15Q92804 592 aaKnown RBP eCLIP15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms