RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 EGFL6Q8IUX8 553 aa17.36■□□□□ 0.37
HMGB3-205ENST00000455596 MKXQ8IYA7 352 aa17.36■□□□□ 0.37
HMGB3-205ENST00000455596 SYS1Q8N2H4 156 aa17.36■□□□□ 0.37
HMGB3-205ENST00000455596 PNKDQ8N490 385 aa17.36■□□□□ 0.37
HMGB3-205ENST00000455596 ASCC1Q8N9N2 400 aaKnown RBP17.36■□□□□ 0.37
HMGB3-205ENST00000455596 ZNF555Q8NEP9 628 aa17.36■□□□□ 0.37
HMGB3-205ENST00000455596 OR4M1Q8NGD0 313 aa17.36■□□□□ 0.37
HMGB3-205ENST00000455596 AMBNQ9NP70 447 aa17.36■□□□□ 0.37
HMGB3-205ENST00000455596 INPP5EQ9NRR6 644 aa17.36■□□□□ 0.37
HMGB3-205ENST00000455596 MYRFQ9Y2G1 1151 aa17.36■□□□□ 0.37
HMGB3-205ENST00000455596 SF3B6Q9Y3B4 125 aaKnown RBP17.36■□□□□ 0.37
HMGB3-205ENST00000455596 RPL36Q9Y3U8 105 aaKnown RBP17.36■□□□□ 0.37
HMGB3-205ENST00000455596 IGKV1-9A0A0C4DH69 117 aa17.35■□□□□ 0.37
HMGB3-205ENST00000455596 MEIOCA2RUB1 952 aa17.35■□□□□ 0.37
HMGB3-205ENST00000455596 BTBD17A6NE02 478 aa17.35■□□□□ 0.37
HMGB3-205ENST00000455596 F8VVB4 439 aa17.35■□□□□ 0.37
HMGB3-205ENST00000455596 F8VWA3 439 aa17.35■□□□□ 0.37
HMGB3-205ENST00000455596 K7N7A8 449 aa17.35■□□□□ 0.37
HMGB3-205ENST00000455596 GPR137BO60478 399 aa17.35■□□□□ 0.37
HMGB3-205ENST00000455596 NDUFA7O95182 113 aa17.35■□□□□ 0.37
HMGB3-205ENST00000455596 CYB5AP00167 134 aa17.35■□□□□ 0.37
HMGB3-205ENST00000455596 IGHA1P01876 353 aa17.35■□□□□ 0.37
HMGB3-205ENST00000455596 AZGP1P25311 298 aaKnown RBP17.35■□□□□ 0.37
HMGB3-205ENST00000455596 MTCP1P56278 107 aa17.35■□□□□ 0.37
HMGB3-205ENST00000455596 TMEM200BQ69YZ2 307 aa17.35■□□□□ 0.37
HMGB3-205ENST00000455596 LHFPL2Q6ZUX7 228 aa17.35■□□□□ 0.37
HMGB3-205ENST00000455596 Q8IYB0 196 aa17.35■□□□□ 0.37
HMGB3-205ENST00000455596 ZNF676Q8N7Q3 588 aa17.35■□□□□ 0.37
HMGB3-205ENST00000455596 OR13C3Q8NGS6 347 aa17.35■□□□□ 0.37
HMGB3-205ENST00000455596 EMG1Q92979 244 aaKnown RBP17.35■□□□□ 0.37
HMGB3-205ENST00000455596 RDH12Q96NR8 316 aa17.35■□□□□ 0.37
HMGB3-205ENST00000455596 SLITRK2Q9H156 845 aa17.35■□□□□ 0.37
HMGB3-205ENST00000455596 BEX1Q9HBH7 125 aa17.35■□□□□ 0.37
HMGB3-205ENST00000455596 ERVK13-1Q9NX77 482 aa17.35■□□□□ 0.37
HMGB3-205ENST00000455596 SMPD3Q9NY59 655 aaPredicted RBP17.35■□□□□ 0.37
HMGB3-205ENST00000455596 hCG_1809904A0A1W2PP81 198 aa17.34■□□□□ 0.37
HMGB3-205ENST00000455596 A0A1W2PPE2 198 aa17.34■□□□□ 0.37
HMGB3-205ENST00000455596 A0A1W2PR64 198 aa17.34■□□□□ 0.37
HMGB3-205ENST00000455596 A0A1W2PRV1 198 aa17.34■□□□□ 0.37
HMGB3-205ENST00000455596 OR4C45A6NMZ5 311 aa17.34■□□□□ 0.37
HMGB3-205ENST00000455596 ANGPTL7O43827 346 aa17.34■□□□□ 0.37
HMGB3-205ENST00000455596 OCM2P0CE71 109 aa17.34■□□□□ 0.37
HMGB3-205ENST00000455596 OCMP0CE72 109 aaPredicted RBP17.34■□□□□ 0.37
HMGB3-205ENST00000455596 POU3F4P49335 361 aa17.34■□□□□ 0.37
HMGB3-205ENST00000455596 HCP5Q6MZN7 132 aa17.34■□□□□ 0.37
HMGB3-205ENST00000455596 OR51A4Q8NGJ6 313 aa17.34■□□□□ 0.37
HMGB3-205ENST00000455596 OR10AC1Q8NH08 325 aa17.34■□□□□ 0.37
HMGB3-205ENST00000455596 SPSB1Q96BD6 273 aa17.34■□□□□ 0.37
HMGB3-205ENST00000455596 OPALINQ96PE5 141 aa17.34■□□□□ 0.37
HMGB3-205ENST00000455596 ISG20L2Q9H9L3 353 aaKnown RBP17.34■□□□□ 0.37
HMGB3-205ENST00000455596 RPSAP08865 295 aaKnown RBP17.33■□□□□ 0.36
HMGB3-205ENST00000455596 RELBQ01201 579 aa17.33■□□□□ 0.36
HMGB3-205ENST00000455596 MRPL28Q13084 256 aaKnown RBP17.33■□□□□ 0.36
HMGB3-205ENST00000455596 MIDNQ504T8 468 aa17.33■□□□□ 0.36
HMGB3-205ENST00000455596 KLHL22Q53GT1 634 aa17.33■□□□□ 0.36
HMGB3-205ENST00000455596 GDPGP1Q6ZNW5 385 aa17.33■□□□□ 0.36
HMGB3-205ENST00000455596 OR52I1Q8NGK6 324 aa17.33■□□□□ 0.36
HMGB3-205ENST00000455596 APH1BQ8WW43 257 aa17.33■□□□□ 0.36
HMGB3-205ENST00000455596 HEXA-AS1Q9H8Q6 139 aa17.33■□□□□ 0.36
HMGB3-205ENST00000455596 MRPS18AQ9NVS2 196 aaKnown RBP17.33■□□□□ 0.36
HMGB3-205ENST00000455596 ZNF737O75373 536 aa17.32■□□□□ 0.36
HMGB3-205ENST00000455596 PIPP12273 146 aaPredicted RBP17.32■□□□□ 0.36
HMGB3-205ENST00000455596 CCL3L1P16619 93 aa17.32■□□□□ 0.36
HMGB3-205ENST00000455596 EDDM3BP56851 147 aa17.32■□□□□ 0.36
HMGB3-205ENST00000455596 ZNF273Q14593 569 aa17.32■□□□□ 0.36
HMGB3-205ENST00000455596 TAF9Q16594 264 aa17.32■□□□□ 0.36
HMGB3-205ENST00000455596 LPCAT4Q643R3 524 aa17.32■□□□□ 0.36
HMGB3-205ENST00000455596 GDPD3Q7L5L3 318 aa17.32■□□□□ 0.36
HMGB3-205ENST00000455596 C11orf42Q8N5U0 333 aa17.32■□□□□ 0.36
HMGB3-205ENST00000455596 SNX22Q96L94 193 aa17.32■□□□□ 0.36
HMGB3-205ENST00000455596 ZNF649Q9BS31 505 aa17.32■□□□□ 0.36
HMGB3-205ENST00000455596 COMMD4Q9H0A8 199 aa17.32■□□□□ 0.36
HMGB3-205ENST00000455596 SEBOXQ9HB31 216 aaPredicted RBP17.32■□□□□ 0.36
HMGB3-205ENST00000455596 VPREB3Q9UKI3 123 aa17.32■□□□□ 0.36
HMGB3-205ENST00000455596 TRBV2A0A0J9YWF9 115 aa17.31■□□□□ 0.36
HMGB3-205ENST00000455596 TMEM212A6NML5 194 aa17.31■□□□□ 0.36
HMGB3-205ENST00000455596 SPRY1O43609 319 aaPredicted RBP17.31■□□□□ 0.36
HMGB3-205ENST00000455596 HAND1O96004 215 aa17.31■□□□□ 0.36
HMGB3-205ENST00000455596 CCDC159P0C7I6 412 aa17.31■□□□□ 0.36
HMGB3-205ENST00000455596 BCL3P20749 454 aa17.31■□□□□ 0.36
HMGB3-205ENST00000455596 NPBWR2P48146 333 aa17.31■□□□□ 0.36
HMGB3-205ENST00000455596 GBX2P52951 348 aaPredicted RBP17.31■□□□□ 0.36
HMGB3-205ENST00000455596 ERVFRD-1P60508 538 aa17.31■□□□□ 0.36
HMGB3-205ENST00000455596 PDZK1IP1Q13113 114 aa17.31■□□□□ 0.36
HMGB3-205ENST00000455596 OLFML2AQ68BL7 652 aa17.31■□□□□ 0.36
HMGB3-205ENST00000455596 OR8H2Q8N162 312 aa17.31■□□□□ 0.36
HMGB3-205ENST00000455596 FAM58AQ8N1B3 248 aa17.31■□□□□ 0.36
HMGB3-205ENST00000455596 BEND2Q8NDZ0 799 aa17.31■□□□□ 0.36
HMGB3-205ENST00000455596 OR13C9Q8NGT0 318 aa17.31■□□□□ 0.36
HMGB3-205ENST00000455596 OR5R1Q8NH85 324 aa17.31■□□□□ 0.36
HMGB3-205ENST00000455596 HAVCR2Q8TDQ0 301 aa17.31■□□□□ 0.36
HMGB3-205ENST00000455596 ZCCHC4Q9H5U6 513 aa17.31■□□□□ 0.36
HMGB3-205ENST00000455596 NEK6Q9HC98 313 aa17.31■□□□□ 0.36
HMGB3-205ENST00000455596 RBFOX1Q9NWB1 397 aaKnown RBP17.31■□□□□ 0.36
HMGB3-205ENST00000455596 CLPSL1A2RUU4 121 aa17.3■□□□□ 0.36
HMGB3-205ENST00000455596 MT-ND2P03891 347 aa17.3■□□□□ 0.36
HMGB3-205ENST00000455596 PRKACAP17612 351 aa17.3■□□□□ 0.36
HMGB3-205ENST00000455596 C17orf107Q6ZR85 190 aa17.3■□□□□ 0.36
HMGB3-205ENST00000455596 OR5AK2Q8NH90 309 aa17.3■□□□□ 0.36
HMGB3-205ENST00000455596 RFT1Q96AA3 541 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms