RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 LZTFL1Q9NQ48 299 aa1.68□□□□□ -2.14
USP40-209ENST00000452724 RPRD1BQ9NQG5 326 aaKnown RBP1.68□□□□□ -2.14
USP40-209ENST00000452724 PARP11Q9NR21 331 aa1.68□□□□□ -2.14
USP40-209ENST00000452724 IFNKQ9P0W0 207 aa1.68□□□□□ -2.14
USP40-209ENST00000452724 RABL2AQ9UBK7 228 aaPredicted RBP1.68□□□□□ -2.14
USP40-209ENST00000452724 TAC3Q9UHF0 121 aa1.68□□□□□ -2.14
USP40-209ENST00000452724 ACOT9Q9Y305 439 aa1.68□□□□□ -2.14
USP40-209ENST00000452724 TRAPPC1Q9Y5R8 145 aa1.68□□□□□ -2.14
USP40-209ENST00000452724 ICOSQ9Y6W8 199 aa1.68□□□□□ -2.14
USP40-209ENST00000452724 SSH2Q76I76 1423 aa1.67□□□□□ -2.14
USP40-209ENST00000452724 IGLV10-54A0A075B6I4 117 aa1.67□□□□□ -2.14
USP40-209ENST00000452724 SYNGR2O43760 224 aa1.67□□□□□ -2.14
USP40-209ENST00000452724 IGHV3-53P01767 116 aa1.67□□□□□ -2.14
USP40-209ENST00000452724 IGHMP01871 453 aa1.67□□□□□ -2.14
USP40-209ENST00000452724 RHOCP08134 193 aa1.67□□□□□ -2.14
USP40-209ENST00000452724 HTR2BP41595 481 aa1.67□□□□□ -2.14
USP40-209ENST00000452724 SLC18A1P54219 525 aa1.67□□□□□ -2.14
USP40-209ENST00000452724 IL5RAQ01344 420 aa1.67□□□□□ -2.14
USP40-209ENST00000452724 TOMM34Q15785 309 aaPredicted RBP1.67□□□□□ -2.14
USP40-209ENST00000452724 DUPD1Q68J44 220 aa1.67□□□□□ -2.14
USP40-209ENST00000452724 CLEC18BQ6UXF7 455 aa1.67□□□□□ -2.14
USP40-209ENST00000452724 SETD3Q86TU7 594 aaPredicted RBP1.67□□□□□ -2.14
USP40-209ENST00000452724 CYP4Z2PQ8N1L4 340 aa1.67□□□□□ -2.14
USP40-209ENST00000452724 CCNYL1Q8N7R7 359 aa1.67□□□□□ -2.14
USP40-209ENST00000452724 OR8A1Q8NGG7 326 aa1.67□□□□□ -2.14
USP40-209ENST00000452724 MUC7Q8TAX7 377 aa1.67□□□□□ -2.14
USP40-209ENST00000452724 PHOSPHO2Q8TCD6 241 aa1.67□□□□□ -2.14
USP40-209ENST00000452724 KIAA1143Q96AT1 154 aaPredicted RBP1.67□□□□□ -2.14
USP40-209ENST00000452724 SRRQ9GZT4 340 aa1.67□□□□□ -2.14
USP40-209ENST00000452724 CHRNA10Q9GZZ6 450 aa1.67□□□□□ -2.14
USP40-209ENST00000452724 PORCNQ9H237 461 aa1.67□□□□□ -2.14
USP40-209ENST00000452724 ASB7Q9H672 318 aa1.67□□□□□ -2.14
USP40-209ENST00000452724 INSIG2Q9Y5U4 225 aa1.67□□□□□ -2.14
USP40-209ENST00000452724 ZNF780BQ9Y6R6 833 aa1.67□□□□□ -2.14
USP40-209ENST00000452724 FBN1P35555 2871 aaKnown RBP1.67□□□□□ -2.14
USP40-209ENST00000452724 SETD1AO15047 1707 aaKnown RBP1.66□□□□□ -2.14
USP40-209ENST00000452724 M0R1B8 84 aa1.66□□□□□ -2.14
USP40-209ENST00000452724 TCAPO15273 167 aa1.66□□□□□ -2.14
USP40-209ENST00000452724 ALOX12BO75342 701 aa1.66□□□□□ -2.14
USP40-209ENST00000452724 PTHLHP12272 177 aa1.66□□□□□ -2.14
USP40-209ENST00000452724 PRKACAP17612 351 aa1.66□□□□□ -2.14
USP40-209ENST00000452724 IFFO1Q0D2I5 559 aa1.66□□□□□ -2.14
USP40-209ENST00000452724 LGALSLQ3ZCW2 172 aaPredicted RBP1.66□□□□□ -2.14
USP40-209ENST00000452724 CLLU1OSQ5K130 101 aa1.66□□□□□ -2.14
USP40-209ENST00000452724 IDNKQ5T6J7 187 aa1.66□□□□□ -2.14
USP40-209ENST00000452724 COMTD1Q86VU5 262 aa1.66□□□□□ -2.14
USP40-209ENST00000452724 AMN1Q8IY45 258 aa1.66□□□□□ -2.14
USP40-209ENST00000452724 ARHGAP18Q8N392 663 aa1.66□□□□□ -2.14
USP40-209ENST00000452724 EIF4E3Q8N5X7 224 aaKnown RBP1.66□□□□□ -2.14
USP40-209ENST00000452724 OR51L1Q8NGJ5 315 aa1.66□□□□□ -2.14
USP40-209ENST00000452724 OR8S1Q8NH09 359 aa1.66□□□□□ -2.14
USP40-209ENST00000452724 UBA3Q8TBC4 463 aa1.66□□□□□ -2.14
USP40-209ENST00000452724 CENPNQ96H22 339 aaPredicted RBP1.66□□□□□ -2.14
USP40-209ENST00000452724 ZNF75AQ96N20 296 aa1.66□□□□□ -2.14
USP40-209ENST00000452724 OR2M4Q96R27 311 aa1.66□□□□□ -2.14
USP40-209ENST00000452724 ANP32EQ9BTT0 268 aa1.66□□□□□ -2.14
USP40-209ENST00000452724 CRLF2Q9HC73 371 aa1.66□□□□□ -2.14
USP40-209ENST00000452724 NLE1Q9NVX2 485 aaPredicted RBP1.66□□□□□ -2.14
USP40-209ENST00000452724 DDIT4Q9NX09 232 aa1.66□□□□□ -2.14
USP40-209ENST00000452724 PCNX2A6NKB5 2137 aa1.66□□□□□ -2.14
USP40-209ENST00000452724 SEC14L6B5MCN3 397 aa1.65□□□□□ -2.15
USP40-209ENST00000452724 K7EPK0 472 aa1.65□□□□□ -2.15
USP40-209ENST00000452724 GATCO43716 136 aaKnown RBP1.65□□□□□ -2.15
USP40-209ENST00000452724 SLC37A4O43826 429 aa1.65□□□□□ -2.15
USP40-209ENST00000452724 TRGV3P03979 118 aa1.65□□□□□ -2.15
USP40-209ENST00000452724 HOXB8P17481 243 aaPredicted RBP1.65□□□□□ -2.15
USP40-209ENST00000452724 WDR43Q15061 677 aaKnown RBP eCLIP1.65□□□□□ -2.15
USP40-209ENST00000452724 SSX1Q16384 188 aa1.65□□□□□ -2.15
USP40-209ENST00000452724 ZNF404Q494X3 552 aa1.65□□□□□ -2.15
USP40-209ENST00000452724 ATP6AP1LQ52LC2 224 aa1.65□□□□□ -2.15
USP40-209ENST00000452724 SYT6Q5T7P8 510 aaPredicted RBP1.65□□□□□ -2.15
USP40-209ENST00000452724 ASCL4Q6XD76 172 aa1.65□□□□□ -2.15
USP40-209ENST00000452724 CPNE9Q8IYJ1 553 aa1.65□□□□□ -2.15
USP40-209ENST00000452724 RPRMLQ8N4K4 120 aa1.65□□□□□ -2.15
USP40-209ENST00000452724 FAM184AQ8NB25 1140 aa1.65□□□□□ -2.15
USP40-209ENST00000452724 TOP1MTQ969P6 601 aa1.65□□□□□ -2.15
USP40-209ENST00000452724 FAM131CQ96AQ9 280 aa1.65□□□□□ -2.15
USP40-209ENST00000452724 RILPQ96NA2 401 aa1.65□□□□□ -2.15
USP40-209ENST00000452724 QKIQ96PU8 341 aaKnown RBP eCLIP1.65□□□□□ -2.15
USP40-209ENST00000452724 SHCBP1LQ9BZQ2 653 aa1.65□□□□□ -2.15
USP40-209ENST00000452724 TSGA10Q9BZW7 698 aa1.65□□□□□ -2.15
USP40-209ENST00000452724 SLC38A1Q9H2H9 487 aa1.65□□□□□ -2.15
USP40-209ENST00000452724 FBXO44Q9H4M3 255 aa1.65□□□□□ -2.15
USP40-209ENST00000452724 AP3M1Q9Y2T2 418 aa1.65□□□□□ -2.15
USP40-209ENST00000452724 SPATA31E1Q6ZUB1 1445 aa1.65□□□□□ -2.15
USP40-209ENST00000452724 TRAV8-7A0A075B6U6 113 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 IGHV3-21A0A0B4J1V1 117 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 LOC389332A0A1B0GUA5 103 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 ANKRD20A5PA0PJZ0 165 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 SDHAF1A6NFY7 115 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 ZNF729A6NN14 1252 aaPredicted RBP1.64□□□□□ -2.15
USP40-209ENST00000452724 C17orf51A8MQB3 221 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 LEUTXA8MZ59 168 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 GGTLC3B5MD39 225 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 K7ERS5 55 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 ISLRO14498 428 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 DEDDO75618 318 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 ZNF708P17019 499 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 IMPA1P29218 277 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 P2RY2P41231 377 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms