RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 PARLQ9H300 379 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 NEU3Q9UQ49 428 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 PRSS21Q9Y6M0 314 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 TCRBV5S1A1TA0A578 114 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 SBK3P0C264 359 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 EMP1P54849 157 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 SIRT6Q8N6T7 355 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 LAT2Q9GZY6 243 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 SOX21Q9Y651 276 aaPredicted RBP11.89□□□□□ -0.51
USP40-208ENST00000450966 DOCK2Q92608 1830 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 A0A0U1RQS6 177 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 METTL12A8MUP2 240 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 PRKRAO75569 313 aaKnown RBP11.88□□□□□ -0.51
USP40-208ENST00000450966 IGHA2P01877 340 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 PRR35P0CG20 571 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 STARD6P59095 220 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 RNF175Q8N4F7 328 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 PIGCQ92535 297 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 ANAPC13Q9BS18 74 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 ITGB1BP1O14713 200 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 EMC4Q5J8M3 183 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 PTPMT1Q8WUK0 201 aaPredicted RBP11.88□□□□□ -0.51
USP40-208ENST00000450966 MEGF9Q9H1U4 602 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 KLF13Q9Y2Y9 288 aaPredicted RBP11.88□□□□□ -0.51
USP40-208ENST00000450966 MARF1Q9Y4F3 1742 aaKnown RBP11.88□□□□□ -0.51
USP40-208ENST00000450966 TRAV36DV7A0A075B6V5 113 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 SEMG1P04279 462 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 RPL7P18124 248 aaKnown RBP11.88□□□□□ -0.51
USP40-208ENST00000450966 RPS4Y1P22090 263 aaKnown RBP11.88□□□□□ -0.51
USP40-208ENST00000450966 GLIPR1P48060 266 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 TCL1AP56279 114 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 DOK3Q7L591 496 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 AAED1Q7RTV5 226 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 SLAMF6Q96DU3 332 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 TRAPPC2LQ9UL33 140 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 UBE2L5PA0A1B0GUS4 154 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 OR2W5A6NFC9 320 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 ARPC3O15145 178 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 IAPPP10997 89 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 TMEM176BQ3YBM2 270 aaPredicted RBP11.88□□□□□ -0.51
USP40-208ENST00000450966 ZCCHC14Q8WYQ9 949 aaKnown RBP11.88□□□□□ -0.51
USP40-208ENST00000450966 ARRDC1-AS1Q9H2J1 176 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 PRRG2O14669 202 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 PSMB5P28074 263 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 RIPPLY3P57055 190 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 TNFRSF12AQ9NP84 129 aa11.88□□□□□ -0.51
USP40-208ENST00000450966 CLEC18AA5D8T8 446 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 KLK8O60259 260 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 ALOX12BO75342 701 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 HTR5AP47898 357 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 UQCRFS1P47985 274 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 FAM181AQ8N9Y4 354 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 CLEC18CQ8NCF0 446 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 OR51H1Q8NH63 302 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 SRD5A3Q9H8P0 318 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 LYRM4Q9HD34 91 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 LAMTOR2Q9Y2Q5 125 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 H7C1C5 153 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 RCC1P18754 421 aaPredicted RBP11.87□□□□□ -0.51
USP40-208ENST00000450966 CYB561P49447 251 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 CKS1BP61024 79 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 MESTQ5EB52 335 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 ERASQ7Z444 233 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 OR2M7Q8NG81 312 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 OR10J5Q8NHC4 309 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 C14orf144Q96I85 54 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 ASPDHA6ND91 283 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 EPHA8P29322 1005 aaPredicted RBP11.87□□□□□ -0.51
USP40-208ENST00000450966 HMGA2P52926 109 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 PNLIPRP2P54317 469 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 TMEM207Q6UWW9 146 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 TMEM136Q6ZRR5 245 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 WNT2BQ93097 391 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 MRPL13Q9BYD1 178 aaKnown RBP11.87□□□□□ -0.51
USP40-208ENST00000450966 TMEM238LA0A1B0GVL6 79 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 A6NJY4 79 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 M0R296 226 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 LANCL1O43813 399 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 C17orf67Q0P5P2 114 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 SNAI3Q3KNW1 292 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 MS4A6EQ96DS6 147 aa11.87□□□□□ -0.51
USP40-208ENST00000450966 CDX2Q99626 313 aaPredicted RBP11.87□□□□□ -0.51
USP40-208ENST00000450966 JOSD1Q15040 202 aaPredicted RBP11.86□□□□□ -0.51
USP40-208ENST00000450966 OR52N4Q8NGI2 321 aa11.86□□□□□ -0.51
USP40-208ENST00000450966 SPINK4O60575 86 aa11.86□□□□□ -0.51
USP40-208ENST00000450966 APCSP02743 223 aa11.86□□□□□ -0.51
USP40-208ENST00000450966 WNT3P56703 355 aa11.86□□□□□ -0.51
USP40-208ENST00000450966 TRMT12Q53H54 448 aaKnown RBP11.86□□□□□ -0.51
USP40-208ENST00000450966 C8orf82Q6P1X6 216 aaPredicted RBP11.86□□□□□ -0.51
USP40-208ENST00000450966 CYB561D1Q8N8Q1 229 aa11.86□□□□□ -0.51
USP40-208ENST00000450966 C6orf106Q9H6K1 298 aaPredicted RBP11.86□□□□□ -0.51
USP40-208ENST00000450966 MED19A0JLT2 244 aaPredicted RBP11.86□□□□□ -0.51
USP40-208ENST00000450966 CD300LDQ6UXZ3 194 aa11.86□□□□□ -0.51
USP40-208ENST00000450966 TMEM64Q6YI46 380 aa11.86□□□□□ -0.51
USP40-208ENST00000450966 PFN4Q8NHR9 129 aa11.86□□□□□ -0.51
USP40-208ENST00000450966 MISP3Q96FF7 219 aa11.86□□□□□ -0.51
USP40-208ENST00000450966 NPIPB8E9PQR5 432 aa11.86□□□□□ -0.51
USP40-208ENST00000450966 CORTO00230 105 aa11.86□□□□□ -0.51
USP40-208ENST00000450966 TIMM8AO60220 97 aaPredicted RBP11.86□□□□□ -0.51
USP40-208ENST00000450966 NPIPB7O75200 414 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms