RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 RSL24D1Q9UHA3 163 aaKnown RBP13.24□□□□□ -0.29
USP40-206ENST00000443711 CCDC168Q8NDH2 2452 aa13.23□□□□□ -0.29
USP40-206ENST00000443711 ISPDA4D126 451 aa13.23□□□□□ -0.29
USP40-206ENST00000443711 F8VVB4 439 aa13.23□□□□□ -0.29
USP40-206ENST00000443711 F8VWA3 439 aa13.23□□□□□ -0.29
USP40-206ENST00000443711 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.23□□□□□ -0.29
USP40-206ENST00000443711 ZNF701M0R085 212 aaPredicted RBP13.23□□□□□ -0.29
USP40-206ENST00000443711 TMEM127O75204 238 aa13.23□□□□□ -0.29
USP40-206ENST00000443711 BPNT1O95861 308 aa13.23□□□□□ -0.29
USP40-206ENST00000443711 SLC2A2P11168 524 aaPredicted RBP13.23□□□□□ -0.29
USP40-206ENST00000443711 SLC25A16P16260 332 aa13.23□□□□□ -0.29
USP40-206ENST00000443711 PRKACAP17612 351 aa13.23□□□□□ -0.29
USP40-206ENST00000443711 HOXA4Q00056 320 aaPredicted RBP13.23□□□□□ -0.29
USP40-206ENST00000443711 SPCS2Q15005 226 aa13.23□□□□□ -0.29
USP40-206ENST00000443711 ZMYND11Q15326 602 aa13.23□□□□□ -0.29
USP40-206ENST00000443711 KCNJ8Q15842 424 aa13.23□□□□□ -0.29
USP40-206ENST00000443711 SLC22A6Q4U2R8 563 aa13.23□□□□□ -0.29
USP40-206ENST00000443711 AVPI1Q5T686 147 aa13.23□□□□□ -0.29
USP40-206ENST00000443711 MUC20Q8N307 709 aaPredicted RBP13.23□□□□□ -0.29
USP40-206ENST00000443711 Q8NFD4 153 aa13.23□□□□□ -0.29
USP40-206ENST00000443711 OR10K1Q8NGX5 313 aa13.23□□□□□ -0.29
USP40-206ENST00000443711 NDNFQ8TB73 568 aa13.23□□□□□ -0.29
USP40-206ENST00000443711 FAM3DQ96BQ1 224 aa13.23□□□□□ -0.29
USP40-206ENST00000443711 DGCR14Q96DF8 476 aaKnown RBP13.23□□□□□ -0.29
USP40-206ENST00000443711 C1orf147Q96MC9 270 aaPredicted RBP13.23□□□□□ -0.29
USP40-206ENST00000443711 CST11Q9H112 138 aa13.23□□□□□ -0.29
USP40-206ENST00000443711 HMG20AQ9NP66 347 aa13.23□□□□□ -0.29
USP40-206ENST00000443711 RBFOX1Q9NWB1 397 aaKnown RBP13.23□□□□□ -0.29
USP40-206ENST00000443711 NLKQ9UBE8 527 aa13.23□□□□□ -0.29
USP40-206ENST00000443711 DAPK2Q9UIK4 370 aa13.23□□□□□ -0.29
USP40-206ENST00000443711 MAST4O15021 2626 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 IGHV3OR15-7A0A075B7D8 119 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 OR2AT4A6NND4 320 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 VWC2LB2RUY7 222 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 NDUFA2O43678 99 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 KNG1P01042 644 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 ARSBP15848 533 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 SERPINA2P20848 420 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 NR4A2P43354 598 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 RORCP51449 518 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 CLDN12P56749 244 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 FGF12P61328 243 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 ZNF404Q494X3 552 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 TMEM155Q4W5P6 130 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 IDNKQ5T6J7 187 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 OR2W3Q7Z3T1 314 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 OSR2Q8N2R0 312 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 OR51D1Q8NGF3 324 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 KCNG3Q8TAE7 436 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 SLC25A46Q96AG3 418 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 SEH1LQ96EE3 360 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 MRPS24Q96EL2 167 aaKnown RBP13.22□□□□□ -0.29
USP40-206ENST00000443711 BPESC1Q9GZL8 116 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 BATF3Q9NR55 127 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 GLS2Q9UI32 602 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 ITGB1BP2Q9UKP3 347 aa13.22□□□□□ -0.29
USP40-206ENST00000443711 PRRC2AP48634 2157 aaKnown RBP13.22□□□□□ -0.29
USP40-206ENST00000443711 IGHV4-30-2A0A087WSY4 118 aa13.21□□□□□ -0.29
USP40-206ENST00000443711 CRTAPO75718 401 aaPredicted RBP13.21□□□□□ -0.29
USP40-206ENST00000443711 VSIG8P0DPA2 414 aa13.21□□□□□ -0.29
USP40-206ENST00000443711 CALCBP10092 127 aa13.21□□□□□ -0.29
USP40-206ENST00000443711 GTF2F2P13984 249 aa13.21□□□□□ -0.29
USP40-206ENST00000443711 C2orf76Q3KRA6 126 aa13.21□□□□□ -0.29
USP40-206ENST00000443711 SPIN3Q5JUX0 258 aa13.21□□□□□ -0.29
USP40-206ENST00000443711 KRTAP1-3Q8IUG1 177 aa13.21□□□□□ -0.29
USP40-206ENST00000443711 SPICQ8N5J4 248 aa13.21□□□□□ -0.29
USP40-206ENST00000443711 OR5T2Q8NGG2 359 aa13.21□□□□□ -0.29
USP40-206ENST00000443711 OR51T1Q8NGJ9 327 aa13.21□□□□□ -0.29
USP40-206ENST00000443711 TMEM246Q9BRR3 403 aa13.21□□□□□ -0.29
USP40-206ENST00000443711 MRI1Q9BV20 369 aa13.21□□□□□ -0.29
USP40-206ENST00000443711 LIN7BQ9HAP6 207 aa13.21□□□□□ -0.29
USP40-206ENST00000443711 A6NHS1 94 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 RFPL4AA6NLU0 287 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 RFPL4AL1F8VTS6 287 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 SH2D1BO14796 132 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 GYPAP02724 150 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 PSG2P11465 335 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 MGMTP16455 207 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 GABRA2P47869 451 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 QRFPP83859 136 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 ZNF146Q15072 292 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 NHLRC3Q5JS37 347 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 ATPAF1Q5TC12 328 aaPredicted RBP13.2□□□□□ -0.3
USP40-206ENST00000443711 STUMQ69YW2 141 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 DCDC5Q6ZRR9 648 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 ANGPTL6Q8NI99 470 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 Q96MF0 132 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 GAL3ST1Q99999 423 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 BARHL1Q9BZE3 327 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 DNTTIP1Q9H147 329 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 BANF2Q9H503 90 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 SEBOXQ9HB31 216 aaPredicted RBP13.2□□□□□ -0.3
USP40-206ENST00000443711 ABRACLQ9P1F3 81 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 FBLN5Q9UBX5 448 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 OR14J1Q9UGF5 321 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 PCDHB10Q9UN67 800 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 ST3GAL6Q9Y274 331 aa13.2□□□□□ -0.3
USP40-206ENST00000443711 IGKV1D-17A0A075B6S4 117 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 A0A0B4J203 849 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 A0A1W2PP11 408 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms