RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 OXGR1Q96P68 337 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 RARRES2Q99969 163 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 SEC11CQ9BY50 192 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 CHST5Q9GZS9 411 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 ZFP57Q9NU63 452 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 V9GYS6 101 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 URB1O60287 2271 aaKnown RBP6.22□□□□□ -1.41
COL28A1-202ENST00000430711 ESPL1Q14674 2120 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 USP24Q9UPU5 2620 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 NCOR2Q9Y618 2525 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 A0A1W2PPE2 198 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 LINC00587B1AMM8 73 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 K7EPK0 472 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 M0R135 149 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 BCAT2O15382 392 aaPredicted RBP6.22□□□□□ -1.41
COL28A1-202ENST00000430711 MTRF1O75570 445 aaKnown RBP6.22□□□□□ -1.41
COL28A1-202ENST00000430711 DHRS3O75911 302 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 OR5H8P0DN80 308 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 SRFP11831 508 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 CCL4P13236 92 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 CCL2P13500 99 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 CPT2P23786 658 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 FOXG1P55316 489 aaPredicted RBP6.22□□□□□ -1.41
COL28A1-202ENST00000430711 TAS2R31P59538 309 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 RPS18P62269 152 aaKnown RBP6.22□□□□□ -1.41
COL28A1-202ENST00000430711 AWAT1Q58HT5 328 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 IGSF11Q5DX21 431 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 RAET1LQ5VY80 246 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 ZNF787Q6DD87 383 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 FAM71E2Q8N5Q1 922 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 HSD17B11Q8NBQ5 300 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 OR10AD1Q8NGE0 317 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 NANPQ8TBE9 248 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 RHBDD1Q8TEB9 315 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 SFT2D1Q8WV19 159 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 ZNF799Q96GE5 643 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 KIRREL1Q96J84 757 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 TP53RKQ96S44 253 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 PLEK2Q9NYT0 353 aa6.22□□□□□ -1.41
COL28A1-202ENST00000430711 MAP1BP46821 2468 aaKnown RBP6.22□□□□□ -1.41
COL28A1-202ENST00000430711 DOCK10Q96BY6 2186 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 GVINP1Q7Z2Y8 2422 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 IGLV3-32A0A0A0MS00 114 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 TRBV23-1A0A0A0MS06 115 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 ZNF503-AS2A6NEH8 195 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 CRYM-AS1A6NIL9 109 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 ZNF726A6NNF4 738 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 CDRT15L2A8MXV6 281 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 HSPB6O14558 160 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 ONECUT2O95948 504 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 IFNA2P01563 188 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 SNRNP70P08621 437 aaKnown RBP6.21□□□□□ -1.41
COL28A1-202ENST00000430711 TBPP20226 339 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 MSR1P21757 451 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 OTX1P32242 354 aaPredicted RBP6.21□□□□□ -1.41
COL28A1-202ENST00000430711 GSK3AP49840 483 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 SULT1A2P50226 295 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 CLDN15P56746 228 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 HOXA4Q00056 320 aaPredicted RBP6.21□□□□□ -1.41
COL28A1-202ENST00000430711 KCNMB1Q16558 191 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 ZNF239Q16600 458 aaKnown RBP6.21□□□□□ -1.41
COL28A1-202ENST00000430711 IZUMO4Q1ZYL8 232 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 WDR74Q6RFH5 385 aaPredicted RBP6.21□□□□□ -1.41
COL28A1-202ENST00000430711 SLC22A25Q6T423 547 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 C5orf46Q6UWT4 87 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 SLC16A14Q7RTX9 510 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 YRDCQ86U90 279 aaKnown RBP6.21□□□□□ -1.41
COL28A1-202ENST00000430711 MISPQ8IVT2 679 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 HAS2Q92819 552 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 NUDT16L1Q9BRJ7 211 aaKnown RBP6.21□□□□□ -1.41
COL28A1-202ENST00000430711 TM2D1Q9BX74 207 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.21□□□□□ -1.41
COL28A1-202ENST00000430711 SDHAF3Q9NRP4 125 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 PLEKHJ1Q9NW61 149 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 ANXA10Q9UJ72 324 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 FBXO9Q9UK97 447 aaPredicted RBP6.21□□□□□ -1.41
COL28A1-202ENST00000430711 FBXO7Q9Y3I1 522 aa6.21□□□□□ -1.41
COL28A1-202ENST00000430711 TPRP12270 2363 aaKnown RBP6.21□□□□□ -1.42
COL28A1-202ENST00000430711 CHD3Q12873 2000 aaKnown RBP6.21□□□□□ -1.42
COL28A1-202ENST00000430711 GPR179Q6PRD1 2367 aa6.21□□□□□ -1.42
COL28A1-202ENST00000430711 PATE3B3GLJ2 98 aa6.21□□□□□ -1.42
COL28A1-202ENST00000430711 TMEM50AO95807 157 aa6.21□□□□□ -1.42
COL28A1-202ENST00000430711 RD3LP0DJH9 198 aa6.21□□□□□ -1.42
COL28A1-202ENST00000430711 CRYGSP22914 178 aa6.21□□□□□ -1.42
COL28A1-202ENST00000430711 HOXA1P49639 335 aaPredicted RBP6.21□□□□□ -1.42
COL28A1-202ENST00000430711 SUCLG1P53597 346 aaKnown RBP6.21□□□□□ -1.42
COL28A1-202ENST00000430711 SUMO3P55854 103 aaPredicted RBP6.21□□□□□ -1.42
COL28A1-202ENST00000430711 MTCP1P56278 107 aa6.21□□□□□ -1.42
COL28A1-202ENST00000430711 ZNF616Q08AN1 781 aa6.21□□□□□ -1.42
COL28A1-202ENST00000430711 ECH1Q13011 328 aa6.21□□□□□ -1.42
COL28A1-202ENST00000430711 TMEM187Q14656 261 aa6.21□□□□□ -1.42
COL28A1-202ENST00000430711 HAGHQ16775 308 aa6.21□□□□□ -1.42
COL28A1-202ENST00000430711 PLA2G2CQ5R387 149 aa6.21□□□□□ -1.42
COL28A1-202ENST00000430711 C9orf135Q5VTT2 229 aa6.21□□□□□ -1.42
COL28A1-202ENST00000430711 MEX3BQ6ZN04 569 aaKnown RBP6.21□□□□□ -1.42
COL28A1-202ENST00000430711 FBXL14Q8N1E6 418 aa6.21□□□□□ -1.42
COL28A1-202ENST00000430711 OR9K2Q8NGE7 335 aa6.21□□□□□ -1.42
COL28A1-202ENST00000430711 NAT6Q93015 286 aa6.21□□□□□ -1.42
COL28A1-202ENST00000430711 TMEM54Q969K7 222 aa6.21□□□□□ -1.42
COL28A1-202ENST00000430711 PSMG3-AS1Q96PY0 264 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms