RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 FAM230AA0A1W2PPH8 454 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 IGSF23A1L1A6 192 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 FAM24AA6NFZ4 105 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 STMND1H3BQB6 276 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 PITX3O75364 302 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 ZNF728P0DKX0 622 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 TMEM225BP0DP42 221 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 COX5BP10606 129 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 MYOGP15173 224 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 FUT3P21217 361 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 BIDP55957 195 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 RELQ04864 619 aaPredicted RBP9.34□□□□□ -0.91
USP54-204ENST00000422491 PLCXD2Q0VAA5 305 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 TMEM196Q5HYL7 178 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 TMEM183AQ8IXX5 376 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 SLC38A9Q8NBW4 561 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 PLPP5Q8NEB5 264 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 TSLPQ969D9 159 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 ZNF700Q9H0M5 742 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 CDH20Q9HBT6 801 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 PNRC2Q9NPJ4 139 aaKnown RBP9.34□□□□□ -0.91
USP54-204ENST00000422491 PPP1R14DQ9NXH3 145 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 KIR2DS5A0A0G2JLQ3 304 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 A0A0G2JNG1 304 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 E9PLN8 166 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 KIR2DS3K7RE56 304 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 EREGO14944 169 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 ZNF205O95201 554 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 AMBPP02760 352 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 GLI4P10075 376 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 TLE3Q04726 772 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 FOXF1Q12946 379 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 EIF3IQ13347 325 aaKnown RBP9.34□□□□□ -0.91
USP54-204ENST00000422491 KIR2DS5Q14953 304 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 ABLIM2Q6H8Q1 611 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 ARMC6Q6NXE6 501 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 OR5L2Q8NGL0 311 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 OR10G4Q8NGN3 311 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 NPRL2Q8WTW4 380 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 MRPL13Q9BYD1 178 aaKnown RBP9.34□□□□□ -0.91
USP54-204ENST00000422491 CHST11Q9NPF2 352 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 SLC2A9Q9NRM0 540 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 CYP8B1Q9UNU6 501 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 TRBV24-1A0A075B6N3 115 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 C5orf63A6NC05 138 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 SEMA4FO95754 770 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 DCAF7P61962 342 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 GNMTQ14749 295 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 ABCA11PQ4W5N1 156 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 CDCP2Q5VXM1 449 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 SPRED2Q7Z698 418 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 LGI3Q8N145 548 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 D2HGDHQ8N465 521 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 POM121Q96HA1 1249 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 OBP2AQ9NY56 170 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 C2orf16Q68DN1 1984 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 A0A1B0GU03 582 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 ZNF732B4DXR9 585 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 CLDN34H7C241 214 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 COL9A1P20849 921 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 HNRNPA2B1P22626 353 aaKnown RBP9.33□□□□□ -0.92
USP54-204ENST00000422491 OR1D4P47884 311 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 MNX1P50219 401 aaPredicted RBP9.33□□□□□ -0.92
USP54-204ENST00000422491 HHEXQ03014 270 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 PHLDA2Q53GA4 152 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 FAM90A2PQ658T7 463 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 FAM57BQ71RH2 274 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 OR5L1Q8NGL2 311 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 FGF14Q92915 247 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 RBMXL1Q96E39 390 aaKnown RBP9.33□□□□□ -0.92
USP54-204ENST00000422491 LIN37Q96GY3 246 aaPredicted RBP9.33□□□□□ -0.92
USP54-204ENST00000422491 DDA1Q9BW61 102 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 GPR87Q9BY21 358 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 PLA2G2FQ9BZM2 168 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 PLEKHJ1Q9NW61 149 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 NXT1Q9UKK6 140 aaKnown RBP9.33□□□□□ -0.92
USP54-204ENST00000422491 POLR1DQ9Y2S0 133 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 MTCH2Q9Y6C9 303 aa9.33□□□□□ -0.92
USP54-204ENST00000422491 IGKV3D-11A0A0A0MRZ8 115 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 GEMIN2O14893 280 aaKnown RBP9.32□□□□□ -0.92
USP54-204ENST00000422491 RER1O15258 196 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 CYB5R3P00387 301 aaPredicted RBP9.32□□□□□ -0.92
USP54-204ENST00000422491 PNLIPP16233 465 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 GABRR1P24046 479 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 CDAP32320 146 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 APLNRP35414 380 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 CD200P41217 278 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 RRADP55042 308 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 ZFP36L1Q07352 338 aaKnown RBP9.32□□□□□ -0.92
USP54-204ENST00000422491 MFAP5Q13361 173 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 SLC35G3Q8N808 338 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 OR2AJ1Q8NGZ0 328 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 SYT3Q9BQG1 590 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 NECAP2Q9NVZ3 263 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 B3GAT1Q9P2W7 334 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 OR14J1Q9UGF5 321 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 LOC102723971A0A1B0GUV8 181 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 A0A1W2PQF6 199 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 IGLV3-1P01715 115 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 SFTPCP11686 197 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms