RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 SRSF7Q16629 238 aaKnown RBP eCLIP7.23□□□□□ -1.25
USP54-203ENST00000418501 CAPSLQ8WWF8 208 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 ZCCHC14Q8WYQ9 949 aaKnown RBP7.23□□□□□ -1.25
USP54-203ENST00000418501 ZMAT3Q9HA38 289 aaKnown RBP7.23□□□□□ -1.25
USP54-203ENST00000418501 DNAJB11Q9UBS4 358 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 MKI67P46013 3256 aaKnown RBP7.23□□□□□ -1.25
USP54-203ENST00000418501 RNF212BA8MTL3 300 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 B3GALNT1O75752 331 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 CCL2P13500 99 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 ZNF14P17017 642 aaPredicted RBP7.23□□□□□ -1.25
USP54-203ENST00000418501 ACKR3P25106 362 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 PAN3Q58A45 887 aaKnown RBP7.23□□□□□ -1.25
USP54-203ENST00000418501 C1orf87Q8N0U7 546 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 NAXEQ8NCW5 288 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 BHLHE23Q8NDY6 225 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 SLAMF9Q96A28 289 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 WBP1Q96G27 269 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 SPIN2AQ99865 258 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 SPIN2BQ9BPZ2 258 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 SLA2Q9H6Q3 261 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 COL27A1Q8IZC6 1860 aaPredicted RBP7.23□□□□□ -1.25
USP54-203ENST00000418501 SOCS1O15524 211 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 HSPA12AO43301 675 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 ANGPTL7O43827 346 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 HLA-AP01891 365 aaKnown RBP7.23□□□□□ -1.25
USP54-203ENST00000418501 PMP2P02689 132 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 ADRB1P08588 477 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 ZNF728P0DKX0 622 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 NTF4P34130 210 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 GLRXP35754 106 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 ZNF83P51522 516 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 ZP1P60852 638 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 OR5T2Q8NGG2 359 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 OR10Z1Q8NGY1 313 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 FGFBP3Q8TAT2 258 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 FAM122AQ96E09 287 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 ZNF486Q96H40 463 aaPredicted RBP7.23□□□□□ -1.25
USP54-203ENST00000418501 DMRTB1Q96MA1 342 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 ZNF436Q9C0F3 470 aaPredicted RBP7.23□□□□□ -1.25
USP54-203ENST00000418501 DNTTIP1Q9H147 329 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 ZC4H2Q9NQZ6 224 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 C1orf123Q9NWV4 160 aa7.23□□□□□ -1.25
USP54-203ENST00000418501 EP300Q09472 2414 aaPredicted RBP7.22□□□□□ -1.25
USP54-203ENST00000418501 A0A0B4J2A0 478 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 C5orf51A6NDU8 294 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 IGKV3-15P01624 115 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 SPINK2P20155 84 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 KITLGP21583 273 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 ZNF626Q68DY1 528 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 LYG2Q86SG7 212 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 FAM90A1Q86YD7 464 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 DVL3Q92997 716 aaPredicted RBP7.22□□□□□ -1.25
USP54-203ENST00000418501 RAB39BQ96DA2 213 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 PIK3IP1Q96FE7 263 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 KIRREL1Q96J84 757 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 GON7Q9BXV9 100 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 OR2J1Q9GZK6 312 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 POFUT1Q9H488 388 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 METTL8Q9H825 291 aaKnown RBP7.22□□□□□ -1.25
USP54-203ENST00000418501 SHPKQ9UHJ6 478 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 CACNA1CQ13936 2221 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 GLI4P10075 376 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 ASCL1P50553 236 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 CTAG1AP78358 180 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 NAAAQ02083 359 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 FCN2Q15485 313 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 GUSBP1Q15486 140 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 RSPO1Q2MKA7 263 aaPredicted RBP7.22□□□□□ -1.25
USP54-203ENST00000418501 TMEM128Q5BJH2 165 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 MBNL2Q5VZF2 373 aaKnown RBP7.22□□□□□ -1.25
USP54-203ENST00000418501 LILRB1Q8NHL6 650 aaPredicted RBP7.22□□□□□ -1.25
USP54-203ENST00000418501 LUZP4Q9P127 313 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 DUSP13Q9UII6 198 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 ANXA10Q9UJ72 324 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 A0A087WV48 116 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 OR4E1P0C645 316 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 OR5H8P0DN80 308 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 AKR1C4P17516 323 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 RFPL4BQ6ZWI9 263 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 SLC38A6Q8IZM9 456 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 TMEM104Q8NE00 496 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 KLF14Q8TD94 323 aaPredicted RBP7.22□□□□□ -1.25
USP54-203ENST00000418501 CCDC120Q96HB5 630 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 NKX3-1Q99801 234 aaPredicted RBP7.22□□□□□ -1.25
USP54-203ENST00000418501 NICN1Q9BSH3 213 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 ZDHHC8Q9ULC8 765 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 CNTRLQ7Z7A1 2325 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 FAM25EA8MYX2 175 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 GRPP07492 148 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 ACAA1P09110 424 aaPredicted RBP7.22□□□□□ -1.25
USP54-203ENST00000418501 ZNF35P13682 527 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 GLRA1P23415 457 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 FABP6P51161 128 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 MECP2P51608 486 aaKnown RBP7.22□□□□□ -1.25
USP54-203ENST00000418501 HLXQ14774 488 aaPredicted RBP7.22□□□□□ -1.25
USP54-203ENST00000418501 LYPD6Q86Y78 171 aa7.22□□□□□ -1.25
USP54-203ENST00000418501 PAQR4Q8N4S7 273 aaPredicted RBP7.22□□□□□ -1.25
USP54-203ENST00000418501 INO80EQ8NBZ0 244 aaPredicted RBP7.22□□□□□ -1.25
USP54-203ENST00000418501 RNASE11Q8TAA1 199 aaKnown RBP7.22□□□□□ -1.25
USP54-203ENST00000418501 C1QTNF6Q9BXI9 259 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms