RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 BATF2Q8N1L9 274 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 ISOC2Q96AB3 205 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 C14orf79Q96F83 325 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 A0A1B0GV50 99 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 SGCEO43556 437 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 SNAPINO95295 136 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 DIRAS3O95661 229 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 TMEM225BP0DP42 221 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 PPT1P50897 306 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 PIGPP57054 158 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 IGSF11Q5DX21 431 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 PLXDC2Q6UX71 529 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 GJC3Q8NFK1 279 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 RBM24Q9BX46 236 aaKnown RBP8.55□□□□□ -1.04
SS18-203ENST00000415083 GHRLQ9UBU3 117 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 WNT16Q9UBV4 365 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 LSM5Q9Y4Y9 91 aaKnown RBP8.55□□□□□ -1.04
SS18-203ENST00000415083 TRAV20A0A0B4J274 112 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 NUDT19A8MXV4 375 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 OR5H8P0DN80 308 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 SNCAP37840 140 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 ASCL1P50553 236 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 NHLH2Q02577 135 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 TMEM42Q69YG0 159 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 PP6455Q8WZ26 134 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 HIST1H2BAQ96A08 127 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 KIRREL1Q96J84 757 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 GPHA2Q96T91 129 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 ABHD14AQ9BUJ0 271 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 RSRP1Q9BUV0 290 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 ANGPTL4Q9BY76 406 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 PADI1Q9ULC6 663 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 APOC1P02654 83 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 RD3LP0DJH9 198 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 GGNQ86UU5 652 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 NAXEQ8NCW5 288 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 SAP25Q8TEE9 199 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 YPEL4Q96NS1 127 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 TP53RKQ96S44 253 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 PLEKHJ1Q9NW61 149 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 C1orf123Q9NWV4 160 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 NXT1Q9UKK6 140 aaKnown RBP8.54□□□□□ -1.04
SS18-203ENST00000415083 RCL1Q9Y2P8 373 aaKnown RBP8.54□□□□□ -1.04
SS18-203ENST00000415083 PQLC2LA1A4F0 135 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 GAPDHP04406 335 aaKnown RBP8.54□□□□□ -1.04
SS18-203ENST00000415083 FOLR2P14207 255 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 CPT2P23786 658 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 STARD6P59095 220 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 CALHM1Q8IU99 346 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 UBAC2Q8NBM4 344 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 AKR7LQ8NHP1 331 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 DEFB126Q9BYW3 111 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 RARRES3Q9UL19 164 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 HS3ST3B1Q9Y662 390 aa8.54□□□□□ -1.04
SS18-203ENST00000415083 FAM230AA0A1W2PPH8 454 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 ZNF716A6NP11 495 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 NME2P1O60361 137 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 RFPL3SP0C7P2 107 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 EPHA8P29322 1005 aaPredicted RBP8.53□□□□□ -1.04
SS18-203ENST00000415083 MTCP1P56278 107 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 FAM3AP98173 230 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 Q0VFX4 171 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 FAM27BQ5VT28 67 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 ELL3Q9HB65 397 aaPredicted RBP8.53□□□□□ -1.04
SS18-203ENST00000415083 PRDM6Q9NQX0 595 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 ZNF407Q9C0G0 2248 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 TRBV23-1A0A0A0MS06 115 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 OR6C6A6NF89 314 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 H7C1Q1 480 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 DANCRP0C864 163 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 EDN3P14138 238 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 NPBWR2P48146 333 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 CCL20P78556 96 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 MIDNQ504T8 468 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 PHLDA2Q53GA4 152 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 SLC22A8Q8TCC7 542 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 TOMM40LQ969M1 308 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 GALNT14Q96FL9 552 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 GINS3Q9BRX5 216 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 NAA60Q9H7X0 242 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 RPS10P5Q9NQ39 176 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 PLEK2Q9NYT0 353 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 DOCK10Q96BY6 2186 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 LAMA5O15230 3695 aa8.53□□□□□ -1.04
SS18-203ENST00000415083 TAAR5O14804 337 aa8.52□□□□□ -1.04
SS18-203ENST00000415083 SCGB1D2O95969 90 aa8.52□□□□□ -1.04
SS18-203ENST00000415083 EIF1P41567 113 aaKnown RBP8.52□□□□□ -1.04
SS18-203ENST00000415083 DVL1P1P54792 670 aaPredicted RBP8.52□□□□□ -1.04
SS18-203ENST00000415083 ZNF92Q03936 586 aa8.52□□□□□ -1.04
SS18-203ENST00000415083 LRTM2Q8N967 370 aa8.52□□□□□ -1.04
SS18-203ENST00000415083 OR4D5Q8NGN0 318 aa8.52□□□□□ -1.04
SS18-203ENST00000415083 NIT2Q9NQR4 276 aa8.52□□□□□ -1.04
SS18-203ENST00000415083 CCDC85CA6NKD9 419 aa8.52□□□□□ -1.05
SS18-203ENST00000415083 SNRNP70P08621 437 aaKnown RBP8.52□□□□□ -1.05
SS18-203ENST00000415083 CCL4P13236 92 aa8.52□□□□□ -1.05
SS18-203ENST00000415083 PPP1CCP36873 323 aaKnown RBP8.52□□□□□ -1.05
SS18-203ENST00000415083 PLA2G5P39877 138 aa8.52□□□□□ -1.05
SS18-203ENST00000415083 PSG4Q00888 419 aa8.52□□□□□ -1.05
SS18-203ENST00000415083 CHAF1BQ13112 559 aa8.52□□□□□ -1.05
SS18-203ENST00000415083 FAM76BQ5HYJ3 339 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms