RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 ELLP55199 621 aaPredicted RBP6.48□□□□□ -1.37
SCN9A-202ENST00000409435 ARF6P62330 175 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.48□□□□□ -1.37
SCN9A-202ENST00000409435 TUSC1Q2TAM9 212 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 ZNF468Q5VIY5 522 aaPredicted RBP6.48□□□□□ -1.37
SCN9A-202ENST00000409435 OR4A16Q8NH70 328 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 RXFP4Q8TDU9 374 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 RDH5Q92781 318 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 OR4C12Q96R67 309 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 A6NIN4 97 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 DNASE2O00115 360 aaPredicted RBP6.48□□□□□ -1.37
SCN9A-202ENST00000409435 SDHDO14521 159 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 CDS2O95674 445 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 OR8U8P0C7N1 319 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 EPXP11678 715 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 ADRA2CP18825 462 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 APOBEC3AP31941 199 aaPredicted RBP6.48□□□□□ -1.37
SCN9A-202ENST00000409435 FAM71E1Q6IPT2 247 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 DGAT2L6Q6ZPD8 337 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 CENPVQ7Z7K6 275 aaPredicted RBP6.48□□□□□ -1.37
SCN9A-202ENST00000409435 CATSPERDQ86XM0 798 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 TMEM99Q8N816 258 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 STARD4Q96DR4 205 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 ATOH8Q96SQ7 321 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 TMEM59Q9BXS4 323 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 C11orf68Q9H3H3 251 aaKnown RBP6.48□□□□□ -1.37
SCN9A-202ENST00000409435 AP5S1Q9NUS5 200 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 CSAG2Q9Y5P2 127 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 ETV7Q9Y603 341 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 ENPP4Q9Y6X5 453 aa6.48□□□□□ -1.37
SCN9A-202ENST00000409435 CELA2AP08217 269 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 GUSBP08236 651 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 MTNR1BP49286 362 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 RIPPLY2Q5TAB7 128 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 LRRC56Q8IYG6 542 aaPredicted RBP6.47□□□□□ -1.37
SCN9A-202ENST00000409435 LINC00469Q8N7U9 141 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 OR5AP2Q8NGF4 316 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 LHFPL5Q8TAF8 219 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 HMGCLL1Q8TB92 370 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 FAM210BQ96KR6 192 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 RP1L1Q8IWN7 2480 aaPredicted RBP6.47□□□□□ -1.37
SCN9A-202ENST00000409435 TAPBPO15533 448 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 TFAP2AP05549 437 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 ZNF728P0DKX0 622 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 SPCS3P61009 180 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 TMEM267Q0VDI3 215 aaPredicted RBP6.47□□□□□ -1.37
SCN9A-202ENST00000409435 ZNF429Q86V71 674 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 CDC20BQ86Y33 519 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 SFTPA2Q8IWL1 248 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 ADAMTS17Q8TE56 1095 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 WBP1Q96G27 269 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 SDF2Q99470 211 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 TREM2Q9NZC2 230 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 SCN10AQ9Y5Y9 1956 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 SYT5O00445 386 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 ST8SIA3O43173 380 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 ATP1B1P05026 303 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 TGM1P22735 817 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 GALR1P47211 349 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 MS4A2Q01362 244 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 DHRS4L2Q6PKH6 230 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 PAQR6Q6TCH4 344 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 PLXDC2Q6UX71 529 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 C1orf174Q8IYL3 243 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 OR52L2PQ8NGH6 319 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 OR5D13Q8NGL4 314 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 GPR78Q96P69 363 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 PARP12Q9H0J9 701 aaKnown RBP6.47□□□□□ -1.37
SCN9A-202ENST00000409435 ZNF385DQ9H6B1 395 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 PLEKHA2Q9HB19 425 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 ASXL3Q9C0F0 2248 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 A0A1W2PN81 502 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 M0R135 149 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 TYROBPO43914 113 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 TMPRSS11DO60235 418 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 ADH4P08319 380 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 BLVRBP30043 206 aaPredicted RBP6.47□□□□□ -1.37
SCN9A-202ENST00000409435 CHRNA7P36544 502 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 IL24Q13007 206 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 PRSS41Q7RTY9 318 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 LINC01555Q8NAE3 123 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 ZNF485Q8NCK3 441 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 OR8J2Q8NGG1 315 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 ZNF799Q96GE5 643 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 TEAD3Q99594 435 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 TINAGL1Q9GZM7 467 aaPredicted RBP6.47□□□□□ -1.37
SCN9A-202ENST00000409435 NAA50Q9GZZ1 169 aaKnown RBP6.47□□□□□ -1.37
SCN9A-202ENST00000409435 CXXC4Q9H2H0 198 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 MMP26Q9NRE1 261 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 COA3Q9Y2R0 106 aaPredicted RBP6.47□□□□□ -1.37
SCN9A-202ENST00000409435 hADV38S2A0JD32 116 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 HS3ST1O14792 307 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 BCL2L11O43521 198 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 PDE6DO43924 150 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 S100A4P26447 101 aaKnown RBP6.47□□□□□ -1.37
SCN9A-202ENST00000409435 SULT1A1P50225 295 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 C21orf58P58505 322 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 HERVK_113P61574 105 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 OR2B11Q5JQS5 317 aa6.47□□□□□ -1.37
SCN9A-202ENST00000409435 NCMAPQ5T1S8 102 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms