RNA–Protein interactions for RNA: ENST00000394963.8

SMARCD1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCD1, Length 3,658 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-202ENST00000394963 FAM3AP98173 230 aa13.78□□□□□ -0.2
SMARCD1-202ENST00000394963 PAN3Q58A45 887 aaKnown RBP13.78□□□□□ -0.2
SMARCD1-202ENST00000394963 C1orf100Q5SVJ3 147 aa13.78□□□□□ -0.2
SMARCD1-202ENST00000394963 ZNF826PQ6ZT77 177 aa13.78□□□□□ -0.2
SMARCD1-202ENST00000394963 TMUB2Q71RG4 321 aa13.78□□□□□ -0.2
SMARCD1-202ENST00000394963 IQCF2Q8IXL9 164 aa13.78□□□□□ -0.2
SMARCD1-202ENST00000394963 APOBEC3DQ96AK3 386 aaPredicted RBP13.78□□□□□ -0.2
SMARCD1-202ENST00000394963 MAGT1Q9H0U3 335 aa13.78□□□□□ -0.2
SMARCD1-202ENST00000394963 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.78□□□□□ -0.2
SMARCD1-202ENST00000394963 TAS2R3Q9NYW6 316 aa13.78□□□□□ -0.2
SMARCD1-202ENST00000394963 DHRS7CA6NNS2 312 aa13.78□□□□□ -0.2
SMARCD1-202ENST00000394963 TSPAN4O14817 238 aa13.78□□□□□ -0.2
SMARCD1-202ENST00000394963 UBBP0CG47 229 aa13.78□□□□□ -0.2
SMARCD1-202ENST00000394963 RPS27AP62979 156 aaKnown RBP13.78□□□□□ -0.2
SMARCD1-202ENST00000394963 EXTL1Q92935 676 aa13.78□□□□□ -0.2
SMARCD1-202ENST00000394963 SARAFQ96BY9 339 aa13.78□□□□□ -0.2
SMARCD1-202ENST00000394963 CMTM3Q96MX0 182 aa13.78□□□□□ -0.2
SMARCD1-202ENST00000394963 PCDHB16Q9NRJ7 776 aa13.78□□□□□ -0.2
SMARCD1-202ENST00000394963 ANKRD34BA5PLL1 514 aa13.77□□□□□ -0.2
SMARCD1-202ENST00000394963 SIGLEC5O15389 551 aa13.77□□□□□ -0.2
SMARCD1-202ENST00000394963 WDR1O75083 606 aa13.77□□□□□ -0.2
SMARCD1-202ENST00000394963 APOC3P02656 99 aa13.77□□□□□ -0.2
SMARCD1-202ENST00000394963 CEBPDP49716 269 aaPredicted RBP13.77□□□□□ -0.2
SMARCD1-202ENST00000394963 TAS2R46P59540 309 aa13.77□□□□□ -0.2
SMARCD1-202ENST00000394963 RFPL4BQ6ZWI9 263 aa13.77□□□□□ -0.2
SMARCD1-202ENST00000394963 ADPRHL1Q8NDY3 354 aa13.77□□□□□ -0.2
SMARCD1-202ENST00000394963 SPRR3Q9UBC9 169 aa13.77□□□□□ -0.2
SMARCD1-202ENST00000394963 AKAP13Q12802 2813 aa13.77□□□□□ -0.2
SMARCD1-202ENST00000394963 OR14I1A6ND48 311 aa13.77□□□□□ -0.21
SMARCD1-202ENST00000394963 PPA1Q15181 289 aa13.77□□□□□ -0.21
SMARCD1-202ENST00000394963 SEZ6L2Q6UXD5 910 aa13.77□□□□□ -0.21
SMARCD1-202ENST00000394963 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.77□□□□□ -0.212e-8■■■■□ 23.4
SMARCD1-202ENST00000394963 SYNGR3O43761 229 aa13.77□□□□□ -0.21
SMARCD1-202ENST00000394963 TNFSF10P50591 281 aa13.77□□□□□ -0.21
SMARCD1-202ENST00000394963 FUT6P51993 359 aa13.77□□□□□ -0.21
SMARCD1-202ENST00000394963 PLA2G2CQ5R387 149 aa13.77□□□□□ -0.21
SMARCD1-202ENST00000394963 FBXW9Q5XUX1 488 aa13.77□□□□□ -0.21
SMARCD1-202ENST00000394963 C9orf170A2RU37 121 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 TK1P04183 234 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 GSTP1P09211 210 aaKnown RBP13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 RRASP10301 218 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 RNPS1Q15287 305 aaKnown RBP13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 OR8G1Q15617 311 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 C10orf128Q5T292 105 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 LHFPL2Q6ZUX7 228 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 OR11L1Q8NGX0 322 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 ZNF75AQ96N20 296 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 ASF1BQ9NVP2 202 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 OR6C65A6NJZ3 312 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 DEGS1O15121 323 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 IL2RAP01589 272 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 GIPP09681 153 aaPredicted RBP13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 GFRA1P56159 465 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 PDZK1IP1Q13113 114 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 TEX261Q6UWH6 196 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 ZNF767PQ75MW2 155 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 LYG2Q86SG7 212 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 OPN4Q9UHM6 478 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 U3KQ87 197 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 IGKV1D-8A0A087WSZ0 117 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 MPTX1A8MV57 137 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 LILRA1O75019 489 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 ARR3P36575 388 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 IGSF11Q5DX21 431 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 PEAR1Q5VY43 1037 aaPredicted RBP13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 THOC7Q6I9Y2 204 aaKnown RBP13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 MYPOPQ86VE0 399 aaPredicted RBP13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 ZNF808Q8N4W9 903 aaPredicted RBP13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 TMEM217Q8N7C4 229 aa13.76□□□□□ -0.21
SMARCD1-202ENST00000394963 ATMQ13315 3056 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 NPIPB13A6NJU9 1138 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 NPIPB4C9JG80 1138 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 NME2P1O60361 137 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 NME2P22392 152 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 EDDM3BP56851 147 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 RSPO1Q2MKA7 263 aaPredicted RBP13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 ZNF528Q3MIS6 628 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 SPSB1Q96BD6 273 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 FOXD3Q9UJU5 478 aaPredicted RBP13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 DOCK11Q5JSL3 2073 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 H3BP45 60 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 CALCRP30988 508 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 ZNF695Q8IW36 515 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 RTN4IP1Q8WWV3 396 aaPredicted RBP13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 MUCL1Q96DR8 90 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 DNTTIP1Q9H147 329 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 SLC17A5Q9NRA2 495 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 ITGB1BP2Q9UKP3 347 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 PPP1R3CQ9UQK1 317 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 PLSCR5A0PG75 271 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 TTLL8A6PVC2 850 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 TMEM14DPA8MWL7 114 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 SPRY3O43610 288 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 SSX5O60225 188 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 DKK1O94907 266 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 CXCL2P19875 107 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 PTGER4P35408 488 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 RPS16P62249 146 aaKnown RBP13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 LAMTOR1Q6IAA8 161 aa13.75□□□□□ -0.21
SMARCD1-202ENST00000394963 WFDC8Q8IUA0 241 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms