RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PDZK1IP1Q13113 114 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 PHYHD1Q5SRE7 291 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 RNF144BQ7Z419 303 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 TMEM123Q8N131 208 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 PPP1R1CQ8WVI7 109 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 C10orf35Q96D05 121 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 CDC6Q99741 560 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 ZNF471Q9BX82 626 aaPredicted RBP8.44□□□□□ -1.06
COL6A3-204ENST00000392003 TUBG2Q9NRH3 451 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 TRAV14DV4A0A0A6YYC5 116 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 A0A1W2PP11 408 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 PPIHO43447 177 aaKnown RBP8.44□□□□□ -1.06
COL6A3-204ENST00000392003 IL2RAP01589 272 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 RAB2AP61019 212 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 MRPS34P82930 218 aaKnown RBP8.44□□□□□ -1.06
COL6A3-204ENST00000392003 CHRFAM7AQ494W8 412 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 PLAC9Q5JTB6 97 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 VAX1Q5SQQ9 334 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 AAED1Q7RTV5 226 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 HOGA1Q86XE5 327 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 PIGTQ969N2 578 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 TSNAXQ99598 290 aaKnown RBP8.44□□□□□ -1.06
COL6A3-204ENST00000392003 PROK2Q9HC23 129 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 MED9Q9NWA0 146 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 A0A0A6YYD4 124 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 IGKV1-9A0A0C4DH69 117 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 C22orf46C9J442 243 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 CSTBP04080 98 aaKnown RBP8.43□□□□□ -1.06
COL6A3-204ENST00000392003 TMEM225BP0DP42 221 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 HLA-GP17693 338 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 CALCRP30988 508 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 NPY4RP50391 375 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 ZNF133P52736 654 aaPredicted RBP8.43□□□□□ -1.06
COL6A3-204ENST00000392003 TMEM128Q5BJH2 165 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 DMRTC1Q5HYR2 192 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 ABHD17BQ5VST6 288 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 FAM27BQ5VT28 67 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 ZNF660Q6AZW8 331 aaPredicted RBP8.43□□□□□ -1.06
COL6A3-204ENST00000392003 FOXL2NBQ6ZUU3 175 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 ACOT7LQ6ZUV0 252 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 PEG10Q86TG7 708 aaKnown RBP8.43□□□□□ -1.06
COL6A3-204ENST00000392003 C20orf196Q8IYI0 205 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 KCNRGQ8N5I3 272 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 ADAD2Q8NCV1 583 aaKnown RBP8.43□□□□□ -1.06
COL6A3-204ENST00000392003 OR5M9Q8NGP3 310 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 THOC3Q96J01 351 aaKnown RBP8.43□□□□□ -1.06
COL6A3-204ENST00000392003 OCSTAMPQ9BR26 566 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 OPA3Q9H6K4 179 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 ABI3Q9P2A4 366 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 EML6Q6ZMW3 1958 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 CCDC187A0A096LP49 1063 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 MFNGO00587 321 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 LCATP04180 440 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 CDC34P49427 236 aaPredicted RBP8.43□□□□□ -1.06
COL6A3-204ENST00000392003 TMEM50BP56557 158 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 SRSF4Q08170 494 aaKnown RBP8.43□□□□□ -1.06
COL6A3-204ENST00000392003 RAB35Q15286 201 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 DRAM2Q6UX65 266 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 SEMA6DQ8NFY4 1073 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 OR10K1Q8NGX5 313 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 NABP1Q96AH0 204 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 C1orf147Q96MC9 270 aaPredicted RBP8.43□□□□□ -1.06
COL6A3-204ENST00000392003 CHST5Q9GZS9 411 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 GFOD1Q9NXC2 390 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 EHFQ9NZC4 300 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 IL17BQ9UHF5 180 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 V9GYS6 101 aa8.43□□□□□ -1.06
COL6A3-204ENST00000392003 DLEU1O43261 78 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 HSPA12AO43301 675 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 PGAM2P15259 253 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 MPGP29372 298 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 CEACAM8P31997 349 aaPredicted RBP8.42□□□□□ -1.06
COL6A3-204ENST00000392003 NPBWR1P48145 328 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 CYB561P49447 251 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 ATP1B3P54709 279 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 SNU13P55769 128 aaKnown RBP8.42□□□□□ -1.06
COL6A3-204ENST00000392003 RAB5BP61020 215 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 ZNF345Q14585 488 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 HSD17B13Q7Z5P4 300 aaPredicted RBP8.42□□□□□ -1.06
COL6A3-204ENST00000392003 C22orf15Q8WYQ4 148 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 LYZL4Q96KX0 146 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 SLC25A32Q9H2D1 315 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 SH2D2AQ9NP31 389 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 TNFSF18Q9UNG2 199 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 SPEGQ15772 3267 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 SERPINE3A8MV23 424 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 F5H0A9 414 aaPredicted RBP8.42□□□□□ -1.06
COL6A3-204ENST00000392003 BCL2L11O43521 198 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 CXCL13O43927 109 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 SERPINA5P05154 406 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 DBHP09172 617 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 ADCYAP1P18509 176 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 FPR2P25090 351 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 MTCP1P56278 107 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 NHLH2Q02577 135 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 CNN3Q15417 329 aaKnown RBP8.42□□□□□ -1.06
COL6A3-204ENST00000392003 ZNF468Q5VIY5 522 aaPredicted RBP8.42□□□□□ -1.06
COL6A3-204ENST00000392003 ZIC4Q8N9L1 334 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 HAS2Q92819 552 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 SRXN1Q9BYN0 137 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms