RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 C6orf201Q7Z4U5 140 aa22.73■■□□□ 1.23
MSX1-201ENST00000382723 NUDCD2Q8WVJ2 157 aa22.73■■□□□ 1.23
MSX1-201ENST00000382723 EMG1Q92979 244 aaKnown RBP22.73■■□□□ 1.23
MSX1-201ENST00000382723 OR2V2Q96R30 315 aa22.73■■□□□ 1.23
MSX1-201ENST00000382723 PECRQ9BY49 303 aa22.73■■□□□ 1.23
MSX1-201ENST00000382723 RBMX2Q9Y388 322 aaKnown RBP22.73■■□□□ 1.23
MSX1-201ENST00000382723 AKR7A2O43488 359 aa22.72■■□□□ 1.23
MSX1-201ENST00000382723 SSX4O60224 188 aa22.72■■□□□ 1.23
MSX1-201ENST00000382723 RBBP9O75884 186 aa22.72■■□□□ 1.23
MSX1-201ENST00000382723 CD200P41217 278 aa22.72■■□□□ 1.23
MSX1-201ENST00000382723 SPRNQ5BIV9 151 aa22.72■■□□□ 1.23
MSX1-201ENST00000382723 HACD4Q5VWC8 232 aa22.72■■□□□ 1.23
MSX1-201ENST00000382723 SIGIRRQ6IA17 410 aa22.72■■□□□ 1.23
MSX1-201ENST00000382723 DCDC5Q6ZRR9 648 aa22.72■■□□□ 1.23
MSX1-201ENST00000382723 GPX8Q8TED1 209 aa22.72■■□□□ 1.23
MSX1-201ENST00000382723 PLEKHJ1Q9NW61 149 aa22.72■■□□□ 1.23
MSX1-201ENST00000382723 HCFC1P51610 2035 aa22.72■■□□□ 1.23
MSX1-201ENST00000382723 LPLP06858 475 aa22.72■■□□□ 1.23
MSX1-201ENST00000382723 DUSP1P28562 367 aa22.72■■□□□ 1.23
MSX1-201ENST00000382723 FAM58AQ8N1B3 248 aa22.72■■□□□ 1.23
MSX1-201ENST00000382723 TLNRD1Q9H1K6 362 aa22.72■■□□□ 1.23
MSX1-201ENST00000382723 CISD1Q9NZ45 108 aaKnown RBP22.72■■□□□ 1.23
MSX1-201ENST00000382723 H7C417 338 aa22.71■■□□□ 1.23
MSX1-201ENST00000382723 MFNGO00587 321 aa22.71■■□□□ 1.23
MSX1-201ENST00000382723 IGHV1-46P01743 117 aa22.71■■□□□ 1.23
MSX1-201ENST00000382723 MELTFP08582 738 aa22.71■■□□□ 1.23
MSX1-201ENST00000382723 GSTP1P09211 210 aaKnown RBP22.71■■□□□ 1.23
MSX1-201ENST00000382723 LOXP28300 417 aaPredicted RBP22.71■■□□□ 1.23
MSX1-201ENST00000382723 RBMXP38159 391 aaKnown RBP22.71■■□□□ 1.23
MSX1-201ENST00000382723 OXA1LQ15070 435 aa22.71■■□□□ 1.23
MSX1-201ENST00000382723 GDPD3Q7L5L3 318 aa22.71■■□□□ 1.23
MSX1-201ENST00000382723 LILRB1Q8NHL6 650 aaPredicted RBP22.71■■□□□ 1.23
MSX1-201ENST00000382723 MEGF10Q96KG7 1140 aa22.71■■□□□ 1.23
MSX1-201ENST00000382723 COX4I2Q96KJ9 171 aa22.71■■□□□ 1.23
MSX1-201ENST00000382723 NEDD4LQ96PU5 975 aa22.71■■□□□ 1.23
MSX1-201ENST00000382723 SCPEP1Q9HB40 452 aa22.71■■□□□ 1.23
MSX1-201ENST00000382723 C1orf123Q9NWV4 160 aa22.71■■□□□ 1.23
MSX1-201ENST00000382723 MTFP1Q9UDX5 166 aa22.71■■□□□ 1.23
MSX1-201ENST00000382723 hCG_1807616A0A1W2PRN6 198 aa22.7■■□□□ 1.23
MSX1-201ENST00000382723 SULT1C2O00338 296 aa22.7■■□□□ 1.23
MSX1-201ENST00000382723 OR7C1O76099 320 aaPredicted RBP22.7■■□□□ 1.23
MSX1-201ENST00000382723 PGA5P0DJD9 388 aa22.7■■□□□ 1.23
MSX1-201ENST00000382723 APOBEC3AP31941 199 aaPredicted RBP22.7■■□□□ 1.23
MSX1-201ENST00000382723 GNG2P59768 71 aa22.7■■□□□ 1.23
MSX1-201ENST00000382723 BRICD5Q6PL45 260 aa22.7■■□□□ 1.23
MSX1-201ENST00000382723 TRAPPC6BQ86SZ2 158 aa22.7■■□□□ 1.23
MSX1-201ENST00000382723 ANKHD1Q8IWZ3 2542 aaKnown RBP22.7■■□□□ 1.22
MSX1-201ENST00000382723 LYRM1O43325 122 aa22.7■■□□□ 1.22
MSX1-201ENST00000382723 PTTG1O95997 202 aa22.7■■□□□ 1.22
MSX1-201ENST00000382723 TNFAIP6P98066 277 aaPredicted RBP22.7■■□□□ 1.22
MSX1-201ENST00000382723 KLF9Q13886 244 aaPredicted RBP22.7■■□□□ 1.22
MSX1-201ENST00000382723 DAZAP2Q15038 168 aaPredicted RBP22.7■■□□□ 1.22
MSX1-201ENST00000382723 WDR82Q6UXN9 313 aa22.7■■□□□ 1.22
MSX1-201ENST00000382723 ITLN1Q8WWA0 313 aa22.7■■□□□ 1.22
MSX1-201ENST00000382723 NRIP2Q9BQI9 281 aa22.7■■□□□ 1.22
MSX1-201ENST00000382723 RALYQ9UKM9 306 aaKnown RBP22.7■■□□□ 1.22
MSX1-201ENST00000382723 ZDHHC8Q9ULC8 765 aa22.7■■□□□ 1.22
MSX1-201ENST00000382723 NXPH2O95156 264 aa22.69■■□□□ 1.22
MSX1-201ENST00000382723 SPNP16150 400 aa22.69■■□□□ 1.22
MSX1-201ENST00000382723 RFX2P48378 723 aa22.69■■□□□ 1.22
MSX1-201ENST00000382723 HOXA4Q00056 320 aaPredicted RBP22.69■■□□□ 1.22
MSX1-201ENST00000382723 ARFRP1Q13795 201 aa22.69■■□□□ 1.22
MSX1-201ENST00000382723 PCGF3Q3KNV8 242 aa22.69■■□□□ 1.22
MSX1-201ENST00000382723 NRARPQ7Z6K4 114 aa22.69■■□□□ 1.22
MSX1-201ENST00000382723 FAAP24Q9BTP7 215 aa22.69■■□□□ 1.22
MSX1-201ENST00000382723 CACNG2Q9Y698 323 aa22.69■■□□□ 1.22
MSX1-201ENST00000382723 GSTT2BP0CG30 244 aa22.69■■□□□ 1.22
MSX1-201ENST00000382723 CHATP28329 748 aa22.69■■□□□ 1.22
MSX1-201ENST00000382723 ERVK11-1P61568 191 aa22.69■■□□□ 1.22
MSX1-201ENST00000382723 ZNF672Q499Z4 452 aaPredicted RBP22.69■■□□□ 1.22
MSX1-201ENST00000382723 ATAD3CQ5T2N8 411 aa22.69■■□□□ 1.22
MSX1-201ENST00000382723 Q8IYB0 196 aa22.69■■□□□ 1.22
MSX1-201ENST00000382723 ZCCHC24Q8N2G6 241 aaKnown RBP22.69■■□□□ 1.22
MSX1-201ENST00000382723 PLCE1Q9P212 2302 aa22.68■■□□□ 1.22
MSX1-201ENST00000382723 ZNF462Q96JM2 2506 aa22.68■■□□□ 1.22
MSX1-201ENST00000382723 M0R233 179 aa22.68■■□□□ 1.22
MSX1-201ENST00000382723 SSX5O60225 188 aa22.68■■□□□ 1.22
MSX1-201ENST00000382723 ECDO95905 644 aaPredicted RBP22.68■■□□□ 1.22
MSX1-201ENST00000382723 TNFSF4P23510 183 aa22.68■■□□□ 1.22
MSX1-201ENST00000382723 IKZF1Q13422 519 aa22.68■■□□□ 1.22
MSX1-201ENST00000382723 NHLRC3Q5JS37 347 aa22.68■■□□□ 1.22
MSX1-201ENST00000382723 MOGAT3Q86VF5 341 aa22.68■■□□□ 1.22
MSX1-201ENST00000382723 POC1AQ8NBT0 407 aa22.68■■□□□ 1.22
MSX1-201ENST00000382723 ST8SIA4Q92187 359 aa22.68■■□□□ 1.22
MSX1-201ENST00000382723 TMEM204Q9BSN7 226 aa22.68■■□□□ 1.22
MSX1-201ENST00000382723 ANKRD20A5PA0PJZ0 165 aa22.67■■□□□ 1.22
MSX1-201ENST00000382723 WNT9BO14905 357 aa22.67■■□□□ 1.22
MSX1-201ENST00000382723 PNLIPRP3Q17RR3 467 aa22.67■■□□□ 1.22
MSX1-201ENST00000382723 MZT2BQ6NZ67 158 aa22.67■■□□□ 1.22
MSX1-201ENST00000382723 RHOFQ9HBH0 211 aa22.67■■□□□ 1.22
MSX1-201ENST00000382723 PDCD6O75340 191 aa22.67■■□□□ 1.22
MSX1-201ENST00000382723 PTBP3O95758 552 aaKnown RBP22.67■■□□□ 1.22
MSX1-201ENST00000382723 RNF224P0DH78 156 aa22.67■■□□□ 1.22
MSX1-201ENST00000382723 AP3S2P59780 193 aa22.67■■□□□ 1.22
MSX1-201ENST00000382723 GVQW1Q8N7I0 195 aa22.67■■□□□ 1.22
MSX1-201ENST00000382723 CELF2-AS1Q8N7Q2 184 aa22.67■■□□□ 1.22
MSX1-201ENST00000382723 DHRS9Q9BPW9 319 aa22.67■■□□□ 1.22
MSX1-201ENST00000382723 SULT4A1Q9BR01 284 aa22.67■■□□□ 1.22
MSX1-201ENST00000382723 WDR13Q9H1Z4 485 aa22.67■■□□□ 1.22
MSX1-201ENST00000382723 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms