RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 LGI3Q8N145 548 aa18.42■□□□□ 0.54
UPF3A-202ENST00000375299 MSI2Q96DH6 328 aaKnown RBP18.42■□□□□ 0.54
UPF3A-202ENST00000375299 REEP6Q96HR9 211 aa18.42■□□□□ 0.54
UPF3A-202ENST00000375299 SPSB2Q99619 263 aa18.42■□□□□ 0.54
UPF3A-202ENST00000375299 LAMA1P25391 3075 aa18.42■□□□□ 0.54
UPF3A-202ENST00000375299 ZNF205O95201 554 aa18.42■□□□□ 0.54
UPF3A-202ENST00000375299 PTGDSP41222 190 aa18.42■□□□□ 0.54
UPF3A-202ENST00000375299 CDX1P47902 265 aaPredicted RBP18.42■□□□□ 0.54
UPF3A-202ENST00000375299 CSNK1A1P48729 337 aa18.42■□□□□ 0.54
UPF3A-202ENST00000375299 CFHR1Q03591 330 aa18.42■□□□□ 0.54
UPF3A-202ENST00000375299 PHLDA2Q53GA4 152 aa18.42■□□□□ 0.54
UPF3A-202ENST00000375299 ANKRD37Q7Z713 158 aa18.42■□□□□ 0.54
UPF3A-202ENST00000375299 MR1Q95460 341 aa18.42■□□□□ 0.54
UPF3A-202ENST00000375299 SLC2A9Q9NRM0 540 aa18.42■□□□□ 0.54
UPF3A-202ENST00000375299 KLK2P20151 261 aa18.41■□□□□ 0.54
UPF3A-202ENST00000375299 MSR1P21757 451 aa18.41■□□□□ 0.54
UPF3A-202ENST00000375299 CD27P26842 260 aa18.41■□□□□ 0.54
UPF3A-202ENST00000375299 AFF3P51826 1226 aaKnown RBP18.41■□□□□ 0.54
UPF3A-202ENST00000375299 EWSR1Q01844 656 aaKnown RBP eCLIP18.41■□□□□ 0.54
UPF3A-202ENST00000375299 HIKESHIQ53FT3 197 aa18.41■□□□□ 0.54
UPF3A-202ENST00000375299 CARFQ8N187 725 aa18.41■□□□□ 0.54
UPF3A-202ENST00000375299 GJC3Q8NFK1 279 aa18.41■□□□□ 0.54
UPF3A-202ENST00000375299 TSTD1Q8NFU3 115 aa18.41■□□□□ 0.54
UPF3A-202ENST00000375299 OR5L1Q8NGL2 311 aa18.41■□□□□ 0.54
UPF3A-202ENST00000375299 NTNG2Q96CW9 530 aa18.41■□□□□ 0.54
UPF3A-202ENST00000375299 C10orf35Q96D05 121 aa18.41■□□□□ 0.54
UPF3A-202ENST00000375299 HSF4Q9ULV5 492 aa18.41■□□□□ 0.54
UPF3A-202ENST00000375299 IGLV3-32A0A0A0MS00 114 aa18.41■□□□□ 0.54
UPF3A-202ENST00000375299 TRBV11-1A0A0K0K1C0 115 aa18.41■□□□□ 0.54
UPF3A-202ENST00000375299 OR5H15A6NDH6 313 aa18.41■□□□□ 0.54
UPF3A-202ENST00000375299 TLX3O43711 291 aaPredicted RBP18.41■□□□□ 0.54
UPF3A-202ENST00000375299 TAF9Q16594 264 aa18.41■□□□□ 0.54
UPF3A-202ENST00000375299 MARS2Q96GW9 593 aaKnown RBP18.41■□□□□ 0.54
UPF3A-202ENST00000375299 METTL9Q9H1A3 318 aa18.41■□□□□ 0.54
UPF3A-202ENST00000375299 VCANP13611 3396 aa18.41■□□□□ 0.54
UPF3A-202ENST00000375299 IGHV1OR21-1A0A087WYE8 117 aa18.4■□□□□ 0.54
UPF3A-202ENST00000375299 GPR37O15354 613 aa18.4■□□□□ 0.54
UPF3A-202ENST00000375299 CLDN17P56750 224 aa18.4■□□□□ 0.54
UPF3A-202ENST00000375299 BOD1Q96IK1 185 aa18.4■□□□□ 0.54
UPF3A-202ENST00000375299 UNKLQ9H9P5 680 aaKnown RBP18.4■□□□□ 0.54
UPF3A-202ENST00000375299 GPR173Q9NS66 373 aa18.4■□□□□ 0.54
UPF3A-202ENST00000375299 RBFOX3A6NFN3 312 aa18.4■□□□□ 0.54
UPF3A-202ENST00000375299 AQP7P3A6NL99 342 aa18.4■□□□□ 0.54
UPF3A-202ENST00000375299 IFITM10A6NMD0 228 aa18.4■□□□□ 0.54
UPF3A-202ENST00000375299 SLC34A2O95436 690 aa18.4■□□□□ 0.54
UPF3A-202ENST00000375299 GLI4P10075 376 aa18.4■□□□□ 0.54
UPF3A-202ENST00000375299 SFTPDP35247 375 aa18.4■□□□□ 0.54
UPF3A-202ENST00000375299 GUCA1AP43080 201 aaPredicted RBP18.4■□□□□ 0.54
UPF3A-202ENST00000375299 PYY3Q5JQD4 70 aa18.4■□□□□ 0.54
UPF3A-202ENST00000375299 ZNF574Q6ZN55 896 aaPredicted RBP18.4■□□□□ 0.54
UPF3A-202ENST00000375299 OR4D5Q8NGN0 318 aa18.4■□□□□ 0.54
UPF3A-202ENST00000375299 ANGPTL4Q9BY76 406 aa18.4■□□□□ 0.54
UPF3A-202ENST00000375299 CHRDQ9H2X0 955 aa18.4■□□□□ 0.54
UPF3A-202ENST00000375299 NELFAQ9H3P2 528 aa18.4■□□□□ 0.54
UPF3A-202ENST00000375299 METTL7AQ9H8H3 244 aa18.4■□□□□ 0.54
UPF3A-202ENST00000375299 PRUNE2Q8WUY3 3088 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 CCDC187A0A096LP49 1063 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 RD3LP0DJH9 198 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 ITGA3P26006 1051 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 HAAOP46952 286 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 ASCL1P50553 236 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 MTCP1P56278 107 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 CHAF1BQ13112 559 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 ENDOGQ14249 297 aaKnown RBP18.39■□□□□ 0.53
UPF3A-202ENST00000375299 GNMTQ14749 295 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 PLXDC1Q8IUK5 500 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 CCDC54Q8NEL0 328 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 OR8G5Q8NG78 346 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 ZNF501Q96CX3 271 aaPredicted RBP18.39■□□□□ 0.53
UPF3A-202ENST00000375299 SYT3Q9BQG1 590 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 TREM2Q9NZC2 230 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 ZNF581Q9P0T4 197 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 MMP24Q9Y5R2 645 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 LMO7DNF2Z398 122 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 ANGPTL7O43827 346 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 CCL20P78556 96 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 RSU1Q15404 277 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 RSPO1Q2MKA7 263 aaPredicted RBP18.39■□□□□ 0.53
UPF3A-202ENST00000375299 OR2G3Q8NGZ4 309 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 RAB39BQ96DA2 213 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 TGIF2Q9GZN2 237 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 TMED3Q9Y3Q3 217 aa18.39■□□□□ 0.53
UPF3A-202ENST00000375299 H3BQ15 152 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 HEXBP07686 556 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 NR2C1P13056 603 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 S100A2P29034 98 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 NDUFA6P56556 154 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 ZNF266Q14584 549 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 SPSB3Q6PJ21 355 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 SLC22A25Q6T423 547 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 OR2M3Q8NG83 312 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 OR10G3Q8NGC4 313 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 PFDN5Q99471 154 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 FGF21Q9NSA1 209 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 B3GALT1Q9Y5Z6 326 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 LOC102725191A0A1B0GVB3 256 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 ZNF727A8MUV8 499 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 M0R135 149 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 PHF1O43189 567 aaPredicted RBP18.38■□□□□ 0.53
UPF3A-202ENST00000375299 SPRY1O43609 319 aaPredicted RBP18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms