RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 TMEM200AQ86VY9 491 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 FNDC9Q8TBE3 224 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 ADAMTS17Q8TE56 1095 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 TTTY12Q9BZ98 90 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 PRRG4Q9BZD6 226 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 CALHM2Q9HA72 323 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 TAS2R3Q9NYW6 316 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 ST3GAL6Q9Y274 331 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 FARS2O95363 451 aaKnown RBP13.34□□□□□ -0.27
UPF3B-202ENST00000345865 CTSDP07339 412 aaPredicted RBP13.34□□□□□ -0.27
UPF3B-202ENST00000345865 NPBWR2P48146 333 aa13.34□□□□□ -0.27
UPF3B-202ENST00000345865 ATRAIDQ6UW56 229 aa13.34□□□□□ -0.27
UPF3B-202ENST00000345865 OR1S2Q8NGQ3 325 aa13.34□□□□□ -0.27
UPF3B-202ENST00000345865 FGF23Q9GZV9 251 aaPredicted RBP13.34□□□□□ -0.27
UPF3B-202ENST00000345865 IL17BQ9UHF5 180 aa13.34□□□□□ -0.27
UPF3B-202ENST00000345865 EDARQ9UNE0 448 aa13.34□□□□□ -0.27
UPF3B-202ENST00000345865 ZNF816-ZNF321PA0A0X1KG74 233 aa13.34□□□□□ -0.27
UPF3B-202ENST00000345865 CRYM-AS1A6NIL9 109 aa13.34□□□□□ -0.27
UPF3B-202ENST00000345865 ZNF850A8MQ14 1090 aa13.34□□□□□ -0.27
UPF3B-202ENST00000345865 HLA-HP01893 362 aa13.34□□□□□ -0.27
UPF3B-202ENST00000345865 ZNF708P17019 499 aa13.34□□□□□ -0.27
UPF3B-202ENST00000345865 ITGA3P26006 1051 aa13.34□□□□□ -0.27
UPF3B-202ENST00000345865 SPEM2Q0P670 501 aa13.34□□□□□ -0.27
UPF3B-202ENST00000345865 DHRS11Q6UWP2 260 aa13.34□□□□□ -0.27
UPF3B-202ENST00000345865 SLC30A7Q8NEW0 376 aa13.34□□□□□ -0.27
UPF3B-202ENST00000345865 CPNE2Q96FN4 548 aaPredicted RBP13.34□□□□□ -0.27
UPF3B-202ENST00000345865 PRDM14Q9GZV8 571 aa13.34□□□□□ -0.27
UPF3B-202ENST00000345865 IL36GQ9NZH8 169 aa13.34□□□□□ -0.27
UPF3B-202ENST00000345865 PCDHB10Q9UN67 800 aa13.34□□□□□ -0.27
UPF3B-202ENST00000345865 ZFHX4Q86UP3 3567 aa13.33□□□□□ -0.27
UPF3B-202ENST00000345865 CCNOP22674 350 aa13.33□□□□□ -0.28
UPF3B-202ENST00000345865 DTYMKP23919 212 aa13.33□□□□□ -0.28
UPF3B-202ENST00000345865 C3AR1Q16581 482 aa13.33□□□□□ -0.28
UPF3B-202ENST00000345865 PDSS1Q5T2R2 415 aa13.33□□□□□ -0.28
UPF3B-202ENST00000345865 BAP18Q8IXM2 172 aa13.33□□□□□ -0.28
UPF3B-202ENST00000345865 TMEM251Q8N6I4 163 aa13.33□□□□□ -0.28
UPF3B-202ENST00000345865 AQP10Q96PS8 301 aa13.33□□□□□ -0.28
UPF3B-202ENST00000345865 GPR87Q9BY21 358 aa13.33□□□□□ -0.28
UPF3B-202ENST00000345865 BCO1Q9HAY6 547 aa13.33□□□□□ -0.28
UPF3B-202ENST00000345865 SLC7A11Q9UPY5 501 aa13.33□□□□□ -0.28
UPF3B-202ENST00000345865 PRRC2CQ9Y520 2896 aaKnown RBP13.33□□□□□ -0.28
UPF3B-202ENST00000345865 LINC01387J3KSC0 135 aa13.33□□□□□ -0.28
UPF3B-202ENST00000345865 FGF16O43320 207 aa13.33□□□□□ -0.28
UPF3B-202ENST00000345865 XRCC2O43543 280 aa13.33□□□□□ -0.28
UPF3B-202ENST00000345865 NRN1LQ496H8 165 aa13.33□□□□□ -0.28
UPF3B-202ENST00000345865 PLA2G2CQ5R387 149 aa13.33□□□□□ -0.28
UPF3B-202ENST00000345865 FOXRED2Q8IWF2 684 aa13.33□□□□□ -0.28
UPF3B-202ENST00000345865 ZNF611Q8N823 705 aa13.33□□□□□ -0.28
UPF3B-202ENST00000345865 BPIFCQ8NFQ6 507 aa13.33□□□□□ -0.28
UPF3B-202ENST00000345865 TOMM40LQ969M1 308 aa13.33□□□□□ -0.28
UPF3B-202ENST00000345865 LINC00470Q9BZP3 86 aa13.33□□□□□ -0.28
UPF3B-202ENST00000345865 TPT1P13693 172 aaKnown RBP13.32□□□□□ -0.28
UPF3B-202ENST00000345865 RBMXP38159 391 aaKnown RBP13.32□□□□□ -0.28
UPF3B-202ENST00000345865 ARHGDIBP52566 201 aa13.32□□□□□ -0.28
UPF3B-202ENST00000345865 RBM11P57052 281 aaKnown RBP13.32□□□□□ -0.28
UPF3B-202ENST00000345865 PIGPP57054 158 aa13.32□□□□□ -0.28
UPF3B-202ENST00000345865 S100A10P60903 97 aa13.32□□□□□ -0.28
UPF3B-202ENST00000345865 NAAAQ02083 359 aa13.32□□□□□ -0.28
UPF3B-202ENST00000345865 SP6Q3SY56 376 aa13.32□□□□□ -0.28
UPF3B-202ENST00000345865 TFAP2EQ6VUC0 442 aa13.32□□□□□ -0.28
UPF3B-202ENST00000345865 SLC25A26Q70HW3 274 aa13.32□□□□□ -0.28
UPF3B-202ENST00000345865 SGPP2Q8IWX5 399 aa13.32□□□□□ -0.28
UPF3B-202ENST00000345865 OR56B2PQ8NGI1 322 aa13.32□□□□□ -0.28
UPF3B-202ENST00000345865 TMED6Q8WW62 240 aa13.32□□□□□ -0.28
UPF3B-202ENST00000345865 MRPL24Q96A35 216 aaKnown RBP13.32□□□□□ -0.28
UPF3B-202ENST00000345865 HS3ST6Q96QI5 342 aa13.32□□□□□ -0.28
UPF3B-202ENST00000345865 NECAP2Q9NVZ3 263 aa13.32□□□□□ -0.28
UPF3B-202ENST00000345865 C1orf123Q9NWV4 160 aa13.32□□□□□ -0.28
UPF3B-202ENST00000345865 ZNF629Q9UEG4 869 aaPredicted RBP13.32□□□□□ -0.28
UPF3B-202ENST00000345865 CFAP47Q6ZTR5 3102 aa13.32□□□□□ -0.28
UPF3B-202ENST00000345865 C21orf140B9A014 251 aa13.31□□□□□ -0.28
UPF3B-202ENST00000345865 M0R296 226 aa13.31□□□□□ -0.28
UPF3B-202ENST00000345865 APOC3P02656 99 aa13.31□□□□□ -0.28
UPF3B-202ENST00000345865 ECI1P42126 302 aa13.31□□□□□ -0.28
UPF3B-202ENST00000345865 IAH1Q2TAA2 248 aaPredicted RBP13.31□□□□□ -0.28
UPF3B-202ENST00000345865 SLC22A25Q6T423 547 aa13.31□□□□□ -0.28
UPF3B-202ENST00000345865 REPIN1Q9BWE0 567 aaKnown RBP13.31□□□□□ -0.28
UPF3B-202ENST00000345865 SLC5A7Q9GZV3 580 aa13.31□□□□□ -0.28
UPF3B-202ENST00000345865 B4GALT7Q9UBV7 327 aa13.31□□□□□ -0.28
UPF3B-202ENST00000345865 C5orf49A4QMS7 147 aa13.31□□□□□ -0.28
UPF3B-202ENST00000345865 RPL36A-HNRNPH2H7BZ11 118 aa13.31□□□□□ -0.28
UPF3B-202ENST00000345865 PDCD6O75340 191 aa13.31□□□□□ -0.28
UPF3B-202ENST00000345865 MT-CO3P00414 261 aa13.31□□□□□ -0.28
UPF3B-202ENST00000345865 FAM157CP0CG43 387 aa13.31□□□□□ -0.28
UPF3B-202ENST00000345865 FXYD4P59646 89 aa13.31□□□□□ -0.28
UPF3B-202ENST00000345865 ZNF585AQ6P3V2 769 aa13.31□□□□□ -0.28
UPF3B-202ENST00000345865 DHRS13Q6UX07 377 aa13.31□□□□□ -0.28
UPF3B-202ENST00000345865 C5orf24Q7Z6I8 188 aa13.31□□□□□ -0.28
UPF3B-202ENST00000345865 TMEM100Q9NV29 134 aa13.31□□□□□ -0.28
UPF3B-202ENST00000345865 ASF1BQ9NVP2 202 aa13.31□□□□□ -0.28
UPF3B-202ENST00000345865 URB1O60287 2271 aaKnown RBP13.31□□□□□ -0.28
UPF3B-202ENST00000345865 A0A1B0GW55 424 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 DUX4L2P0CJ85 424 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 DUX4L3P0CJ86 424 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 DUX4L4P0CJ87 422 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 DUX4L5P0CJ88 424 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 DUX4L6P0CJ89 424 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 DUX4L7P0CJ90 424 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 GLI4P10075 376 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 FCGR2CP31995 323 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms