RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 HRASP01112 189 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 Q0VFX4 171 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 FXNQ16595 210 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 TMEM229BQ8NBD8 167 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 FAM222BQ8WU58 562 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 APH1BQ8WW43 257 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 ORAI1Q96D31 301 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 C1RLQ9NZP8 487 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 CYB5R1Q9UHQ9 305 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 UNC13CQ8NB66 2214 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 FABP7O15540 132 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 TRAF3IP2O43734 574 aaPredicted RBP8.84□□□□□ -0.99
USP54-201ENST00000339859 TOXO94900 526 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 C1QCP02747 245 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 LIMS3P0CW19 117 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 LIMS4P0CW20 117 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 NAT2P11245 290 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 NKX6-1P78426 367 aaPredicted RBP8.84□□□□□ -0.99
USP54-201ENST00000339859 OR2B11Q5JQS5 317 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 DMKNQ6E0U4 476 aaPredicted RBP8.84□□□□□ -0.99
USP54-201ENST00000339859 ABLIM2Q6H8Q1 611 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 OR10K2Q6IF99 312 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 CCDC144NLQ6NUI1 221 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 RPUSD3Q6P087 351 aaKnown RBP8.84□□□□□ -0.99
USP54-201ENST00000339859 MDS2Q8NDY4 140 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 OR51S1Q8NGJ8 323 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 OR1S2Q8NGQ3 325 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 GPR31O00270 319 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 GZMHP20718 246 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 AVPI1Q5T686 147 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 ZNF385CQ66K41 422 aaPredicted RBP8.84□□□□□ -0.99
USP54-201ENST00000339859 FAHD2BQ6P2I3 314 aaPredicted RBP8.84□□□□□ -0.99
USP54-201ENST00000339859 Q6ZS92 163 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 ITLN1Q8WWA0 313 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 FAHD2AQ96GK7 314 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 HYLS1Q96M11 299 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 HSPB11Q9Y547 144 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 NUDT19A8MXV4 375 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 TNFSF12O43508 249 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 GYPAP02724 150 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 TFAP2AP05549 437 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 HRH1P35367 487 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 MAFIPQ8WZ33 124 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 LPAR2Q9HBW0 351 aa8.84□□□□□ -0.99
USP54-201ENST00000339859 SF3B6Q9Y3B4 125 aaKnown RBP8.84□□□□□ -0.99
USP54-201ENST00000339859 IGHV1-69-2A0A0G2JMI3 117 aa8.83□□□□□ -1
USP54-201ENST00000339859 PROB1E7EW31 1015 aa8.83□□□□□ -1
USP54-201ENST00000339859 K7EPK0 472 aa8.83□□□□□ -1
USP54-201ENST00000339859 RPL11P62913 178 aaKnown RBP8.83□□□□□ -1
USP54-201ENST00000339859 ATPAF1Q5TC12 328 aaPredicted RBP8.83□□□□□ -1
USP54-201ENST00000339859 FAM71E2Q8N5Q1 922 aa8.83□□□□□ -1
USP54-201ENST00000339859 MS4A3Q96HJ5 214 aa8.83□□□□□ -1
USP54-201ENST00000339859 UBQLN2Q9UHD9 624 aa8.83□□□□□ -1
USP54-201ENST00000339859 IGLV1-36A0A0B4J1U3 117 aa8.83□□□□□ -1
USP54-201ENST00000339859 RPS10-NUDT3A0A1W2PQS6 291 aa8.83□□□□□ -1
USP54-201ENST00000339859 SSX4O60224 188 aa8.83□□□□□ -1
USP54-201ENST00000339859 BSPH1Q075Z2 132 aa8.83□□□□□ -1
USP54-201ENST00000339859 STUMQ69YW2 141 aa8.83□□□□□ -1
USP54-201ENST00000339859 DOLPP1Q86YN1 238 aa8.83□□□□□ -1
USP54-201ENST00000339859 BORCS7Q96B45 105 aa8.83□□□□□ -1
USP54-201ENST00000339859 POM121L2Q96KW2 1035 aa8.83□□□□□ -1
USP54-201ENST00000339859 CIB3Q96Q77 187 aaPredicted RBP8.83□□□□□ -1
USP54-201ENST00000339859 PINLYPA6NC86 204 aa8.83□□□□□ -1
USP54-201ENST00000339859 FGF9P31371 208 aaPredicted RBP8.83□□□□□ -1
USP54-201ENST00000339859 COL10A1Q03692 680 aa8.83□□□□□ -1
USP54-201ENST00000339859 ZNF616Q08AN1 781 aa8.83□□□□□ -1
USP54-201ENST00000339859 RASL11BQ9BPW5 248 aa8.83□□□□□ -1
USP54-201ENST00000339859 DHRS9Q9BPW9 319 aa8.83□□□□□ -1
USP54-201ENST00000339859 FKBP11Q9NYL4 201 aa8.83□□□□□ -1
USP54-201ENST00000339859 PSG11Q9UQ72 335 aa8.83□□□□□ -1
USP54-201ENST00000339859 CA11O75493 328 aa8.83□□□□□ -1
USP54-201ENST00000339859 TGM6O95932 706 aa8.83□□□□□ -1
USP54-201ENST00000339859 ARHGAP5-AS1Q96IT6 56 aa8.83□□□□□ -1
USP54-201ENST00000339859 UNKLQ9H9P5 680 aaKnown RBP8.83□□□□□ -1
USP54-201ENST00000339859 IL19Q9UHD0 177 aa8.83□□□□□ -1
USP54-201ENST00000339859 A6NHS1 94 aa8.83□□□□□ -1
USP54-201ENST00000339859 DEFB108AA8MXU0 73 aa8.83□□□□□ -1
USP54-201ENST00000339859 FOXH1O75593 365 aa8.83□□□□□ -1
USP54-201ENST00000339859 SMIM18P0DKX4 95 aa8.83□□□□□ -1
USP54-201ENST00000339859 SRSF6Q13247 344 aaKnown RBP8.83□□□□□ -1
USP54-201ENST00000339859 SNTB1Q13884 538 aaKnown RBP8.83□□□□□ -1
USP54-201ENST00000339859 PDCD1Q15116 288 aa8.83□□□□□ -1
USP54-201ENST00000339859 IGF2-ASQ6U949 168 aa8.83□□□□□ -1
USP54-201ENST00000339859 KLF14Q8TD94 323 aaPredicted RBP8.83□□□□□ -1
USP54-201ENST00000339859 TMEM56Q96MV1 263 aa8.83□□□□□ -1
USP54-201ENST00000339859 RNF167Q9H6Y7 350 aa8.83□□□□□ -1
USP54-201ENST00000339859 ASCL3Q9NQ33 180 aa8.83□□□□□ -1
USP54-201ENST00000339859 A0A0B4J203 849 aa8.82□□□□□ -1
USP54-201ENST00000339859 ZNF205O95201 554 aa8.82□□□□□ -1
USP54-201ENST00000339859 ARG1P05089 322 aa8.82□□□□□ -1
USP54-201ENST00000339859 IGHV1-2P23083 117 aa8.82□□□□□ -1
USP54-201ENST00000339859 PRDX2P32119 198 aa8.82□□□□□ -1
USP54-201ENST00000339859 THBS3P49746 956 aa8.82□□□□□ -1
USP54-201ENST00000339859 PDZK1IP1Q13113 114 aa8.82□□□□□ -1
USP54-201ENST00000339859 ARTNQ5T4W7 220 aa8.82□□□□□ -1
USP54-201ENST00000339859 DDOQ99489 341 aa8.82□□□□□ -1
USP54-201ENST00000339859 FAAP24Q9BTP7 215 aa8.82□□□□□ -1
USP54-201ENST00000339859 PECRQ9BY49 303 aa8.82□□□□□ -1
USP54-201ENST00000339859 WNT5BQ9H1J7 359 aa8.82□□□□□ -1
USP54-201ENST00000339859 RBFOX1Q9NWB1 397 aaKnown RBP8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms