RNA–Protein interactions for RNA: ENST00000337526.10

RTN4-202, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,790 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-202ENST00000337526 RPS4Y2Q8TD47 263 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 FBLIM1Q8WUP2 373 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 PRR13Q9NZ81 148 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 PCDHGA9Q9Y5G4 932 aaKnown RBP12.18□□□□□ -0.46
RTN4-202ENST00000337526 M0R1B8 84 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 B3GALNT1O75752 331 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 SPP1P10451 314 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 ZNF17P17021 662 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 CA6P23280 308 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 CEACAM6P40199 344 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 ACAA2P42765 397 aaKnown RBP12.18□□□□□ -0.46
RTN4-202ENST00000337526 SURF2Q15527 256 aaPredicted RBP12.18□□□□□ -0.46
RTN4-202ENST00000337526 OR1C1Q15619 314 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 CXorf67Q86X51 503 aaPredicted RBP12.18□□□□□ -0.46
RTN4-202ENST00000337526 UBALD2Q8IYN6 164 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 FAM103A1Q9BTL3 118 aaKnown RBP12.18□□□□□ -0.46
RTN4-202ENST00000337526 ST6GALNAC2Q9UJ37 374 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 OR2M5A3KFT3 312 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 SPINT1O43278 529 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 CTSDP07339 412 aaPredicted RBP12.18□□□□□ -0.46
RTN4-202ENST00000337526 SLC25A42Q86VD7 318 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 CPEB3Q8NE35 698 aaKnown RBP12.18□□□□□ -0.46
RTN4-202ENST00000337526 GINS3Q9BRX5 216 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 LIPT2A6NK58 231 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 CHEK1O14757 476 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 IGF2P01344 180 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 HEXAP06865 529 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 POLR2GP62487 172 aaKnown RBP eCLIP12.18□□□□□ -0.46
RTN4-202ENST00000337526 RPS4XP62701 263 aaKnown RBP12.18□□□□□ -0.46
RTN4-202ENST00000337526 TMEM267Q0VDI3 215 aaPredicted RBP12.18□□□□□ -0.46
RTN4-202ENST00000337526 OR10D4PQ8NGN7 298 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 TRAF4Q9BUZ4 470 aaPredicted RBP12.18□□□□□ -0.46
RTN4-202ENST00000337526 PECRQ9BY49 303 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 YBX2Q9Y2T7 364 aaKnown RBP12.18□□□□□ -0.46
RTN4-202ENST00000337526 ATP23Q9Y6H3 246 aa12.18□□□□□ -0.46
RTN4-202ENST00000337526 TRGV5A0A0B4J1U4 118 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 M0R1X1 148 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 KIR2DL1P43626 348 aaPredicted RBP12.17□□□□□ -0.46
RTN4-202ENST00000337526 MMP16P51512 607 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 NANOS3P60323 173 aaKnown RBP12.17□□□□□ -0.46
RTN4-202ENST00000337526 MESP2Q0VG99 397 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 MOB1BQ7L9L4 216 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 PRSS27Q9BQR3 290 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.17□□□□□ -0.46
RTN4-202ENST00000337526 TAAR3PQ9P1P4 343 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 CACNG5Q9UF02 275 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 EFNB2P52799 333 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 TSPO2Q5TGU0 170 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 KISS1RQ969F8 398 aaPredicted RBP12.17□□□□□ -0.46
RTN4-202ENST00000337526 RASL10BQ96S79 203 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 ADAT1Q9BUB4 502 aaKnown RBP12.17□□□□□ -0.46
RTN4-202ENST00000337526 FOCADQ5VW36 1801 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 TAF1LQ8IZX4 1826 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 MEX3AA1L020 520 aaKnown RBP12.17□□□□□ -0.46
RTN4-202ENST00000337526 CTRB1P17538 263 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 PEBP1P30086 187 aaKnown RBP12.17□□□□□ -0.46
RTN4-202ENST00000337526 GALNSP34059 522 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 RAC3P60763 192 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 CTRB2Q6GPI1 263 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 RGS7BPQ6MZT1 257 aaPredicted RBP12.17□□□□□ -0.46
RTN4-202ENST00000337526 LYPD8Q6UX82 237 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 GHITMQ9H3K2 345 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 UCK1Q9HA47 277 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 ZNF107Q9UII5 783 aaPredicted RBP12.17□□□□□ -0.46
RTN4-202ENST00000337526 DTX4Q9Y2E6 619 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 MAP1LC3B2A6NCE7 125 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 CLEC3BP05452 202 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 FABP4P15090 132 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 LSM6P62312 80 aaKnown RBP12.17□□□□□ -0.46
RTN4-202ENST00000337526 GNB1P62873 340 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 PRR27Q6MZM9 219 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 PTPMT1Q8WUK0 201 aaPredicted RBP12.17□□□□□ -0.46
RTN4-202ENST00000337526 SHANK3Q9BYB0 1731 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 MAP1LC3BQ9GZQ8 125 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 ARRDC1-AS1Q9H2J1 176 aa12.17□□□□□ -0.46
RTN4-202ENST00000337526 WNK3Q9BYP7 1800 aa12.16□□□□□ -0.46
RTN4-202ENST00000337526 HPP00738 406 aa12.16□□□□□ -0.46
RTN4-202ENST00000337526 VSIG8P0DPA2 414 aa12.16□□□□□ -0.46
RTN4-202ENST00000337526 SRD5A2P31213 254 aa12.16□□□□□ -0.46
RTN4-202ENST00000337526 CSN1S1P47710 185 aa12.16□□□□□ -0.46
RTN4-202ENST00000337526 SLC38A11Q08AI6 406 aa12.16□□□□□ -0.46
RTN4-202ENST00000337526 TRA2AQ13595 282 aaKnown RBP eCLIP12.16□□□□□ -0.463e-8■■■□□ 18.5
RTN4-202ENST00000337526 OR10V1Q8NGI7 309 aa12.16□□□□□ -0.46
RTN4-202ENST00000337526 CHAC2Q8WUX2 184 aa12.16□□□□□ -0.46
RTN4-202ENST00000337526 TAAR9Q96RI9 348 aa12.16□□□□□ -0.46
RTN4-202ENST00000337526 ESRP2Q9H6T0 727 aaKnown RBP12.16□□□□□ -0.46
RTN4-202ENST00000337526 SHISA7A6NL88 538 aa12.16□□□□□ -0.46
RTN4-202ENST00000337526 WFDC8Q8IUA0 241 aa12.16□□□□□ -0.46
RTN4-202ENST00000337526 CFHR5Q9BXR6 569 aa12.16□□□□□ -0.46
RTN4-202ENST00000337526 CLCF1Q9UBD9 225 aa12.16□□□□□ -0.46
RTN4-202ENST00000337526 CCL2P13500 99 aa12.16□□□□□ -0.46
RTN4-202ENST00000337526 LPAR6P43657 344 aa12.16□□□□□ -0.46
RTN4-202ENST00000337526 STPG2Q8N412 459 aa12.16□□□□□ -0.46
RTN4-202ENST00000337526 ZPLD1Q8TCW7 415 aa12.16□□□□□ -0.46
RTN4-202ENST00000337526 POMT1Q9Y6A1 747 aa12.16□□□□□ -0.46
RTN4-202ENST00000337526 TRAV20A0A0B4J274 112 aa12.15□□□□□ -0.46
RTN4-202ENST00000337526 IGKV1-8A0A0C4DH67 115 aa12.15□□□□□ -0.46
RTN4-202ENST00000337526 ERVFC1-1P60608 527 aa12.15□□□□□ -0.46
RTN4-202ENST00000337526 PPP1CBP62140 327 aa12.15□□□□□ -0.46
RTN4-202ENST00000337526 CLPPQ16740 277 aaPredicted RBP12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms