RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ISG15P05161 165 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 GLRA1P23415 457 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 AVPR2P30518 371 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 LIMS1P48059 325 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 MAGT1Q9H0U3 335 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 CES1P1Q9UKY3 287 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 PTBP3O95758 552 aaKnown RBP9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 FOXF1Q12946 379 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 KHDC3LQ587J8 217 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 GGNBP1Q5YKI7 109 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 NTMQ9P121 344 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 FBXL17Q9UF56 701 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 LRRC61Q9BV99 259 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 SLC52A3Q9NQ40 469 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 MED29Q9NX70 200 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 MMP24Q9Y5R2 645 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 DOCK8Q8NF50 2099 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 OR7C2O60412 319 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 CDKN2AP42771 156 aaKnown RBP9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 GPM6AP51674 278 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 TMEM33P57088 247 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 SLC38A11Q08AI6 406 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 CLEC9AQ6UXN8 241 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 RNF133Q8WVZ7 376 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 ARSGQ96EG1 525 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 TRIB1Q96RU8 372 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 CNTD2Q9H8S5 307 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 KCNE3Q9Y6H6 103 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 SULT1A1P50225 295 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 PPP2CBP62714 309 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 PPP2CAP67775 309 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 HLA-DRB3P79483 266 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 ABLIM2Q6H8Q1 611 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 MRGPRGQ86SM5 289 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 OR11H7Q8NGC8 314 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 ORAI1Q96D31 301 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 NRSN2Q9GZP1 204 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 TMEM167BQ9NRX6 74 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 PPP1R3CQ9UQK1 317 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 PCDHGA9Q9Y5G4 932 aaKnown RBP9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 TNFRSF1AP19438 455 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 OR51B6Q9H340 312 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 RRP8O43159 456 aaKnown RBP9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 FABP9Q0Z7S8 132 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 SLC35E3Q7Z769 313 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 H1FOOQ8IZA3 346 aaPredicted RBP9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 SLC2A8Q9NY64 477 aa9.15□□□□□ -0.94
CCDC88A-202ENST00000336838 EDDM3BP56851 147 aa9.15□□□□□ -0.95
CCDC88A-202ENST00000336838 SKP2Q13309 424 aa9.15□□□□□ -0.95
CCDC88A-202ENST00000336838 STXBP6Q8NFX7 210 aa9.15□□□□□ -0.95
CCDC88A-202ENST00000336838 HELZP42694 1942 aaKnown RBP9.15□□□□□ -0.95
CCDC88A-202ENST00000336838 ZNF320A2RRD8 509 aa9.15□□□□□ -0.95
CCDC88A-202ENST00000336838 SELENOPP49908 381 aa9.15□□□□□ -0.95
CCDC88A-202ENST00000336838 DMWDQ09019 674 aa9.15□□□□□ -0.95
CCDC88A-202ENST00000336838 TMEM196Q5HYL7 178 aa9.15□□□□□ -0.95
CCDC88A-202ENST00000336838 FFAR4Q5NUL3 377 aa9.15□□□□□ -0.95
CCDC88A-202ENST00000336838 LIAT1Q6ZQX7 453 aa9.15□□□□□ -0.95
CCDC88A-202ENST00000336838 EID2BQ96D98 161 aa9.15□□□□□ -0.95
CCDC88A-202ENST00000336838 TMEM231Q9H6L2 316 aa9.15□□□□□ -0.95
CCDC88A-202ENST00000336838 ZNF737O75373 536 aa9.15□□□□□ -0.95
CCDC88A-202ENST00000336838 ZNF66Q6ZN08 573 aa9.15□□□□□ -0.95
CCDC88A-202ENST00000336838 TMEM104Q8NE00 496 aa9.15□□□□□ -0.95
CCDC88A-202ENST00000336838 SH2D2AQ9NP31 389 aa9.15□□□□□ -0.95
CCDC88A-202ENST00000336838 FRRS1LQ9P0K9 344 aa9.15□□□□□ -0.95
CCDC88A-202ENST00000336838 TXNDC12O95881 172 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 CBR1P16152 277 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 ZNF528Q3MIS6 628 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 TMEM240Q5SV17 173 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 OR10A7Q8NGE5 316 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 IFI44Q8TCB0 444 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 NOL4LQ96MY1 436 aaPredicted RBP9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 VAX2Q9UIW0 290 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 FAM90A10PA6NDY2 464 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 FAM90A18PA6NE21 464 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 FAM90A16PA6NEW6 464 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 FAM90A20PA6NIJ5 464 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 FAM90A8PA6NJQ4 464 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 FAM90A7PA6NKC0 464 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 FAM90A22PA8MWA6 464 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 FAM90A12PA8MX19 464 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 FAM90A5PA8MXJ8 464 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 FAM90A23PA8MXZ1 464 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 FAM90A15PP0C7V4 464 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 FAM90A13PP0C7W8 464 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 FAM90A14PP0C7W9 464 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 FAM90A24PP0C7X0 464 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 THSD4Q6ZMP0 1018 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 FBXL14Q8N1E6 418 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 HIF1ANQ9NWT6 349 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 TRAV20A0A0B4J274 112 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 HNRNPA3P51991 378 aaKnown RBP9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 RAC3P60763 192 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 PPP1CAP62136 330 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 MRGPREQ86SM8 312 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 SRP14P37108 136 aaKnown RBP9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 GTF2H5Q6ZYL4 71 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 VN1R4Q7Z5H5 301 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 FAM122AQ96E09 287 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 VN1R1Q9GZP7 353 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 PHF3Q92576 2039 aaKnown RBP9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms