RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 OR10C1Q96KK4 312 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 ELOVL1Q9BW60 279 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 GSX1Q9H4S2 264 aaPredicted RBP10.24□□□□□ -0.77
VPS39-201ENST00000318006 WNT16Q9UBV4 365 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 DOCK3Q8IZD9 2030 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 K7EQS6 105 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 TOX3O15405 576 aaPredicted RBP10.24□□□□□ -0.77
VPS39-201ENST00000318006 TCF21O43680 179 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 MOSPD3O75425 235 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 F12P00748 615 aaPredicted RBP10.24□□□□□ -0.77
VPS39-201ENST00000318006 MBPP02686 304 aaPredicted RBP10.24□□□□□ -0.77
VPS39-201ENST00000318006 NAAAQ02083 359 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 SLC38A11Q08AI6 406 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 TMEM267Q0VDI3 215 aaPredicted RBP10.24□□□□□ -0.77
VPS39-201ENST00000318006 IL24Q13007 206 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 RGS7BPQ6MZT1 257 aaPredicted RBP10.24□□□□□ -0.77
VPS39-201ENST00000318006 DEGS2Q6QHC5 323 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 TMEM91Q6ZNR0 172 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 C11orf40Q8WZ69 217 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 FBXO17Q96EF6 278 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 PRSS50Q9UI38 385 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 IGHV5-51A0A0C4DH38 117 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 SIRPB1O00241 398 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 CDC42EP2O14613 210 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 WISP3O95389 354 aaPredicted RBP10.24□□□□□ -0.77
VPS39-201ENST00000318006 PRICKLE4Q2TBC4 344 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 JMJD6Q6NYC1 403 aaPredicted RBP10.24□□□□□ -0.77
VPS39-201ENST00000318006 GVQW1Q8N7I0 195 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 SPSB1Q96BD6 273 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 ZNF764Q96H86 408 aaPredicted RBP10.24□□□□□ -0.77
VPS39-201ENST00000318006 ALX4Q9H161 411 aaPredicted RBP10.24□□□□□ -0.77
VPS39-201ENST00000318006 C12orf49Q9H741 205 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 ABCD4O14678 606 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 LIMK1P53667 647 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 FOXF1Q12946 379 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 DPPA3Q6W0C5 159 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 ZDHHC19Q8WVZ1 309 aaPredicted RBP10.24□□□□□ -0.77
VPS39-201ENST00000318006 TRMT61AQ96FX7 289 aaKnown RBP10.24□□□□□ -0.77
VPS39-201ENST00000318006 GINS3Q9BRX5 216 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 A0A1B0GTH9 108 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 FFAR1O14842 300 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 HRASP01112 189 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 KRASP01116 189 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 GPM6AP51674 278 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 FUT6P51993 359 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 TBC1D28Q2M2D7 210 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 COL5A1-AS1Q5SY13 56 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 MYPOPQ86VE0 399 aaPredicted RBP10.23□□□□□ -0.77
VPS39-201ENST00000318006 LSRQ86X29 649 aaPredicted RBP10.23□□□□□ -0.77
VPS39-201ENST00000318006 DYNLRB1Q9NP97 96 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 HDGFL3Q9Y3E1 203 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 ZNFX1Q9P2E3 1918 aaKnown RBP10.23□□□□□ -0.77
VPS39-201ENST00000318006 C3orf85A0A1B0GTC6 90 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 NPIPB8E9PQR5 432 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 K7ERU9 68 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 CTSDP07339 412 aaPredicted RBP10.23□□□□□ -0.77
VPS39-201ENST00000318006 ADH4P08319 380 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 OR5AC1P0C628 307 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 SULT1A2P50226 295 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 ZNF660Q6AZW8 331 aaPredicted RBP10.23□□□□□ -0.77
VPS39-201ENST00000318006 VHLLQ6RSH7 139 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 SPACA9Q96E40 222 aaPredicted RBP10.23□□□□□ -0.77
VPS39-201ENST00000318006 KTI12Q96EK9 354 aaPredicted RBP10.23□□□□□ -0.77
VPS39-201ENST00000318006 IGHV1OR21-1A0A087WYE8 117 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 IGHV1OR15-9A0A0B4J2B8 117 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 LOC105371267A0A1B0GV96 52 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 BMPR1BO00238 502 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 SPRY1O43609 319 aaPredicted RBP10.23□□□□□ -0.77
VPS39-201ENST00000318006 SEC11BP0C7V7 166 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 IL3RAP26951 378 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 CLDN15P56746 228 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 LRP11Q86VZ4 500 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 FBXL14Q8N1E6 418 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 MSL2Q9HCI7 577 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 KLF13Q9Y2Y9 288 aaPredicted RBP10.23□□□□□ -0.77
VPS39-201ENST00000318006 PLXNB2O15031 1838 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 M0R1X1 148 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 CXCL13O43927 109 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 CFDP00746 253 aaPredicted RBP10.23□□□□□ -0.77
VPS39-201ENST00000318006 RPL13AP40429 203 aaKnown RBP10.23□□□□□ -0.77
VPS39-201ENST00000318006 RPL24P83731 157 aaKnown RBP10.23□□□□□ -0.77
VPS39-201ENST00000318006 ELOBQ15370 118 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 KISS1Q15726 138 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 RPEL1Q2QD12 228 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 COX19Q49B96 90 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 C17orf78Q8N4C9 275 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 OR5AU1Q8NGC0 362 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 MENTQ9BUN1 341 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 SMDT1Q9H4I9 107 aa10.23□□□□□ -0.77
VPS39-201ENST00000318006 MRPS18AQ9NVS2 196 aaKnown RBP10.23□□□□□ -0.77
VPS39-201ENST00000318006 FAM3AP98173 230 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 VWA1Q6PCB0 445 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 RPS4Y2Q8TD47 263 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 SP7Q8TDD2 431 aaPredicted RBP10.22□□□□□ -0.77
VPS39-201ENST00000318006 STARD4Q96DR4 205 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 NGBQ9NPG2 151 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 DNAJB12Q9NXW2 375 aaKnown RBP10.22□□□□□ -0.77
VPS39-201ENST00000318006 FUT9Q9Y231 359 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 KIF13BQ9NQT8 1826 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 GALR2O43603 387 aaPredicted RBP10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms