RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 AMMECR1Q9Y4X0 333 aaPredicted RBP6.88□□□□□ -1.31
SCN9A-201ENST00000303354 CTLA4P16410 223 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 TIAL1Q01085 375 aaKnown RBP eCLIP6.88□□□□□ -1.311e-15■■■■□ 24.3
SCN9A-201ENST00000303354 MGAT2Q10469 447 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 ZNF528Q3MIS6 628 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 OR52L2PQ8NGH6 319 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 OR1K1Q8NGR3 316 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 C14orf79Q96F83 325 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 HDHD3Q9BSH5 251 aaPredicted RBP6.88□□□□□ -1.31
SCN9A-201ENST00000303354 SCNM1Q9BWG6 230 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 MYH9P35579 1960 aaKnown RBP6.88□□□□□ -1.31
SCN9A-201ENST00000303354 HSPB2A8KAH6 182 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 SEMA7AO75326 666 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 SNAPINO95295 136 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 CSN3P07498 182 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 SRPXP78539 464 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 HSPB2Q16082 182 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 BHLHA9Q7RTU4 235 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 OR4F17Q8NGA8 305 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 OR13D1Q8NGV5 346 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 IL22RA2Q969J5 263 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 PECRQ9BY49 303 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 RNF7Q9UBF6 113 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 FABP9Q0Z7S8 132 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 TMEM251Q8N6I4 163 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 FDCSPQ8NFU4 85 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 ASB10Q8WXI3 467 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 GATA6Q92908 595 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 TMEM56Q96MV1 263 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 FER1L6Q2WGJ9 1857 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 EIF3GO75821 320 aaKnown RBP eCLIP6.88□□□□□ -1.31
SCN9A-201ENST00000303354 NPY1RP25929 384 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 MRPS11P82912 194 aaKnown RBP6.88□□□□□ -1.31
SCN9A-201ENST00000303354 DCTN5Q9BTE1 182 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 C17orf51A8MQB3 221 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 GNG7O60262 68 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 ZIC3O60481 467 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 DFFBO76075 338 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 HTN3P15516 51 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 LCN2P80188 198 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 SKP2Q13309 424 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 RNF2Q99496 336 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 TMEM140Q9NV12 185 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 SIRT5Q9NXA8 310 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 CD160O95971 181 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 CCR9P51686 369 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 OR2M3Q8NG83 312 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 OR13F1Q8NGS4 319 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 EDARADDQ8WWZ3 215 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 SLC25A10Q9UBX3 287 aaPredicted RBP6.88□□□□□ -1.31
SCN9A-201ENST00000303354 RNF151Q2KHN1 245 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 DUX5Q96PT3 197 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 NIPSNAP3BQ9BS92 247 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 EMP1P54849 157 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 ZNF425Q6IV72 752 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 RBPMS2Q6ZRY4 209 aaKnown RBP6.87□□□□□ -1.31
SCN9A-201ENST00000303354 D2HGDHQ8N465 521 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 OR4C16Q8NGL9 310 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 IGHV3-48P01763 117 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 LSM11P83369 360 aaKnown RBP eCLIP6.87□□□□□ -1.31
SCN9A-201ENST00000303354 RELAQ04206 551 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 ZNF141Q15928 474 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 C9orf40Q8IXQ3 194 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 OR5AP2Q8NGF4 316 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 IGHV1-45A0A0A0MS14 117 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 CENPVL1A0A0U1RR11 272 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 TCRBV5S2A0A599 114 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 SOCS1O15524 211 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 REG1AP05451 166 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 FOSL1P15407 271 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 PMCHP20382 165 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 KRTDAPP60985 99 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 MMDQ15546 238 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 MUC15Q8N387 334 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 OR5R1Q8NH85 324 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 A0A1B0GUL6 1792 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 PPIAL4EA0A075B759 164 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 IFITM5A6NNB3 132 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 PPIAL4DF5H284 164 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 UPK3AO75631 287 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 OR2C1O95371 312 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 RNASE1P07998 156 aaKnown RBP6.87□□□□□ -1.31
SCN9A-201ENST00000303354 PPIAL4FP0DN26 164 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 FUT3P21217 361 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 ECI1P42126 302 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 GFRA1P56159 465 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 Q71RC1 249 aaPredicted RBP6.87□□□□□ -1.31
SCN9A-201ENST00000303354 KCNK17Q96T54 332 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 ZNF665Q9H7R5 613 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 GPR35Q9HC97 309 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 PILRBQ9UKJ0 227 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 PPIAL4AQ9Y536 164 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 CDK5RAP2Q96SN8 1893 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 NKX2-6A6NCS4 301 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 CDKN1AP38936 164 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 CD200P41217 278 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 SLC24A4Q8NFF2 622 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 SSMEM1Q8WWF3 244 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 CXorf58Q96LI9 332 aa6.87□□□□□ -1.31
SCN9A-201ENST00000303354 SPNP16150 400 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms