RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 OR5R1Q8NH85 324 aa11.81□□□□□ -0.52
SKA3-201ENST00000298260 SCGB3A2Q96PL1 93 aa11.81□□□□□ -0.52
SKA3-201ENST00000298260 NKX2-4Q9H2Z4 354 aa11.81□□□□□ -0.52
SKA3-201ENST00000298260 PRTFDC1Q9NRG1 225 aa11.81□□□□□ -0.52
SKA3-201ENST00000298260 PNO1Q9NRX1 252 aaKnown RBP11.81□□□□□ -0.52
SKA3-201ENST00000298260 GAB2Q9UQC2 676 aa11.81□□□□□ -0.52
SKA3-201ENST00000298260 IGKV1-9A0A0C4DH69 117 aa11.8□□□□□ -0.52
SKA3-201ENST00000298260 GPR137BO60478 399 aa11.8□□□□□ -0.52
SKA3-201ENST00000298260 CHRM2P08172 466 aa11.8□□□□□ -0.52
SKA3-201ENST00000298260 RPL23AP62750 156 aaKnown RBP11.8□□□□□ -0.52
SKA3-201ENST00000298260 KIR2DS3Q14952 304 aa11.8□□□□□ -0.52
SKA3-201ENST00000298260 DTX1Q86Y01 620 aa11.8□□□□□ -0.52
SKA3-201ENST00000298260 KCNG3Q8TAE7 436 aa11.8□□□□□ -0.52
SKA3-201ENST00000298260 BAHD1Q8TBE0 780 aaPredicted RBP11.8□□□□□ -0.52
SKA3-201ENST00000298260 OR10A2Q9H208 303 aa11.8□□□□□ -0.52
SKA3-201ENST00000298260 STRAPQ9Y3F4 350 aaKnown RBP11.8□□□□□ -0.52
SKA3-201ENST00000298260 TRAV36DV7A0A075B6V5 113 aa11.8□□□□□ -0.52
SKA3-201ENST00000298260 ZFP92A6NM28 416 aa11.8□□□□□ -0.52
SKA3-201ENST00000298260 TNFSF14O43557 240 aa11.8□□□□□ -0.52
SKA3-201ENST00000298260 TMEM225BP0DP42 221 aa11.8□□□□□ -0.52
SKA3-201ENST00000298260 ZNF17P17021 662 aa11.8□□□□□ -0.52
SKA3-201ENST00000298260 RABIFP47224 123 aa11.8□□□□□ -0.52
SKA3-201ENST00000298260 CSNK1A1P48729 337 aa11.8□□□□□ -0.52
SKA3-201ENST00000298260 EWSR1Q01844 656 aaKnown RBP eCLIP11.8□□□□□ -0.52
SKA3-201ENST00000298260 TFF2Q03403 129 aa11.8□□□□□ -0.52
SKA3-201ENST00000298260 PRTGQ2VWP7 1150 aa11.8□□□□□ -0.52
SKA3-201ENST00000298260 OR6X1Q8NH79 312 aa11.8□□□□□ -0.52
SKA3-201ENST00000298260 CALHM2Q9HA72 323 aa11.8□□□□□ -0.52
SKA3-201ENST00000298260 GPR84Q9NQS5 396 aa11.8□□□□□ -0.52
SKA3-201ENST00000298260 GNG13Q9P2W3 67 aa11.8□□□□□ -0.52
SKA3-201ENST00000298260 IGSF23A1L1A6 192 aa11.79□□□□□ -0.52
SKA3-201ENST00000298260 MARCH11A6NNE9 402 aa11.79□□□□□ -0.52
SKA3-201ENST00000298260 SHISA8B8ZZ34 492 aa11.79□□□□□ -0.52
SKA3-201ENST00000298260 CLDN17P56750 224 aa11.79□□□□□ -0.52
SKA3-201ENST00000298260 POU3F1Q03052 451 aaPredicted RBP11.79□□□□□ -0.52
SKA3-201ENST00000298260 SGCBQ16585 318 aa11.79□□□□□ -0.52
SKA3-201ENST00000298260 MPV17LQ2QL34 196 aa11.79□□□□□ -0.52
SKA3-201ENST00000298260 C1orf87Q8N0U7 546 aa11.79□□□□□ -0.52
SKA3-201ENST00000298260 C11orf40Q8WZ69 217 aa11.79□□□□□ -0.52
SKA3-201ENST00000298260 METTL9Q9H1A3 318 aa11.79□□□□□ -0.52
SKA3-201ENST00000298260 ANAPC10Q9UM13 185 aa11.79□□□□□ -0.52
SKA3-201ENST00000298260 A0A1B0GUS0 222 aa11.79□□□□□ -0.52
SKA3-201ENST00000298260 CRYM-AS1A6NIL9 109 aa11.79□□□□□ -0.52
SKA3-201ENST00000298260 C17orf105B2RV13 164 aa11.79□□□□□ -0.52
SKA3-201ENST00000298260 PLPP3O14495 311 aa11.79□□□□□ -0.52
SKA3-201ENST00000298260 CLPSP04118 112 aa11.79□□□□□ -0.52
SKA3-201ENST00000298260 RPL29P47914 159 aaKnown RBP11.79□□□□□ -0.52
SKA3-201ENST00000298260 FGF8P55075 233 aaPredicted RBP11.79□□□□□ -0.52
SKA3-201ENST00000298260 HLA-DRB3P79483 266 aa11.79□□□□□ -0.52
SKA3-201ENST00000298260 HNF4GQ14541 408 aa11.79□□□□□ -0.52
SKA3-201ENST00000298260 TMEM208Q9BTX3 173 aa11.79□□□□□ -0.52
SKA3-201ENST00000298260 PECRQ9BY49 303 aa11.79□□□□□ -0.52
SKA3-201ENST00000298260 PLA2G3Q9NZ20 509 aa11.79□□□□□ -0.52
SKA3-201ENST00000298260 LINC01565O15544 149 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 GALR2O43603 387 aaPredicted RBP11.78□□□□□ -0.52
SKA3-201ENST00000298260 CELA2BP08218 269 aaPredicted RBP11.78□□□□□ -0.52
SKA3-201ENST00000298260 SUCLG1P53597 346 aaKnown RBP11.78□□□□□ -0.52
SKA3-201ENST00000298260 FOXL2P58012 376 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 MFAP5Q13361 173 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 PDCD1Q15116 288 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 LBHQ53QV2 105 aaPredicted RBP11.78□□□□□ -0.52
SKA3-201ENST00000298260 KLHL24Q6TFL4 600 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 GPR137CQ8N3F9 429 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 SLC35G3Q8N808 338 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 OR10J5Q8NHC4 309 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 RHBDD1Q8TEB9 315 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 RTN4IP1Q8WWV3 396 aaPredicted RBP11.78□□□□□ -0.52
SKA3-201ENST00000298260 CABLES2Q9BTV7 478 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 A0A087WWC5 75 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 TMED7-TICAM2A0A0A6YYA0 188 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 XKRY2A2RUG3 117 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 GPR89AB7ZAQ6 455 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 GPR89BP0CG08 455 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 HOXA6P31267 233 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 ERVS71-1P61550 626 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 SLC22A25Q6T423 547 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 TMEM183AQ8IXX5 376 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 PRSS58Q8IYP2 241 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 RNF133Q8WVZ7 376 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 TMEM37Q8WXS4 190 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 WNT5AP41221 380 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 ALDH3B1P43353 468 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 TAS2R46P59540 309 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.78□□□□□ -0.52
SKA3-201ENST00000298260 C16orf47Q6ZP98 133 aaPredicted RBP11.78□□□□□ -0.52
SKA3-201ENST00000298260 BATF2Q8N1L9 274 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 RAB24Q969Q5 203 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 HIST1H2AAQ96QV6 131 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 FAAP24Q9BTP7 215 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 GLRX2Q9NS18 164 aa11.78□□□□□ -0.52
SKA3-201ENST00000298260 DMDP11532 3685 aa11.77□□□□□ -0.52
SKA3-201ENST00000298260 ZNF850A8MQ14 1090 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 RER1O15258 196 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 FOLR1P15328 257 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 PMS2P11Q13670 270 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 TMEM187Q14656 261 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 FBXL14Q8N1E6 418 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 LFNGQ8NES3 379 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 OR8B12Q8NGG6 310 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 OR5C1Q8NGR4 320 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms