RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 ZNF766Q5HY98 468 aa20.67■□□□□ 0.9
TRIM54-201ENST00000296098 ZNF75AQ96N20 296 aa20.67■□□□□ 0.9
TRIM54-201ENST00000296098 DMRTA2Q96SC8 542 aa20.67■□□□□ 0.9
TRIM54-201ENST00000296098 ARPC5LQ9BPX5 153 aa20.67■□□□□ 0.9
TRIM54-201ENST00000296098 DECR2Q9NUI1 292 aa20.67■□□□□ 0.9
TRIM54-201ENST00000296098 ZNF407Q9C0G0 2248 aa20.67■□□□□ 0.9
TRIM54-201ENST00000296098 MPTX1A8MV57 137 aa20.66■□□□□ 0.9
TRIM54-201ENST00000296098 RBMXP38159 391 aaKnown RBP20.66■□□□□ 0.9
TRIM54-201ENST00000296098 BRICD5Q6PL45 260 aa20.66■□□□□ 0.9
TRIM54-201ENST00000296098 RELL2Q8NC24 303 aaPredicted RBP20.66■□□□□ 0.9
TRIM54-201ENST00000296098 PHYHIPLQ96FC7 376 aa20.66■□□□□ 0.9
TRIM54-201ENST00000296098 RASL12Q9NYN1 266 aa20.66■□□□□ 0.9
TRIM54-201ENST00000296098 KNTC1P50748 2209 aa20.66■□□□□ 0.9
TRIM54-201ENST00000296098 ARHGAP21Q5T5U3 1957 aa20.66■□□□□ 0.9
TRIM54-201ENST00000296098 SS18L1O75177 396 aaPredicted RBP20.66■□□□□ 0.9
TRIM54-201ENST00000296098 CD82P27701 267 aa20.66■□□□□ 0.9
TRIM54-201ENST00000296098 PLP2Q04941 152 aa20.66■□□□□ 0.9
TRIM54-201ENST00000296098 POM121L2Q96KW2 1035 aa20.66■□□□□ 0.9
TRIM54-201ENST00000296098 DHRS9Q9BPW9 319 aa20.66■□□□□ 0.9
TRIM54-201ENST00000296098 RNF126Q9BV68 326 aa20.66■□□□□ 0.9
TRIM54-201ENST00000296098 C1QTNF6Q9BXI9 259 aa20.66■□□□□ 0.9
TRIM54-201ENST00000296098 PRSS50Q9UI38 385 aa20.66■□□□□ 0.9
TRIM54-201ENST00000296098 TRGV5A0A0B4J1U4 118 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 F5H0A9 414 aaPredicted RBP20.65■□□□□ 0.9
TRIM54-201ENST00000296098 SLC22A25Q6T423 547 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 GLRX5Q86SX6 157 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 PIP4P1Q86T03 277 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 SGPP2Q8IWX5 399 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 ZDHHC23Q8IYP9 409 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 TMEM178AQ8NBL3 297 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 WDYHV1Q96HA8 205 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 OR10C1Q96KK4 312 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 C2orf50Q96LR7 162 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 C12orf49Q9H741 205 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 ZNF286AQ9HBT8 521 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 C12orf4Q9NQ89 552 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 C1orf123Q9NWV4 160 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 SPRR3Q9UBC9 169 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 A0A1B0GW55 424 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 FAM221AA4D161 298 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 CST4P01036 141 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 DUX4L2P0CJ85 424 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 DUX4L3P0CJ86 424 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 DUX4L4P0CJ87 422 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 DUX4L5P0CJ88 424 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 DUX4L6P0CJ89 424 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 DUX4L7P0CJ90 424 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 FAM74A1Q5RGS3 127 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 POC1AQ8NBT0 407 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 HPSE2Q8WWQ2 592 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 POM121Q96HA1 1249 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 LIME1Q9H400 295 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 CRIM1Q9NZV1 1036 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 DUX4Q9UBX2 424 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 KCNMB2Q9Y691 235 aa20.65■□□□□ 0.9
TRIM54-201ENST00000296098 TEX13DA0A0J9YY54 714 aaPredicted RBP20.64■□□□□ 0.89
TRIM54-201ENST00000296098 CRYM-AS1A6NIL9 109 aa20.64■□□□□ 0.89
TRIM54-201ENST00000296098 H0YIZ8 118 aa20.64■□□□□ 0.89
TRIM54-201ENST00000296098 KCNAB3O43448 404 aa20.64■□□□□ 0.89
TRIM54-201ENST00000296098 GALR2O43603 387 aaPredicted RBP20.64■□□□□ 0.89
TRIM54-201ENST00000296098 FUT3P21217 361 aa20.64■□□□□ 0.89
TRIM54-201ENST00000296098 ZP3P21754 424 aa20.64■□□□□ 0.89
TRIM54-201ENST00000296098 NPBWR2P48146 333 aa20.64■□□□□ 0.89
TRIM54-201ENST00000296098 RNFT1Q5M7Z0 435 aa20.64■□□□□ 0.89
TRIM54-201ENST00000296098 PRSS54Q6PEW0 395 aa20.64■□□□□ 0.89
TRIM54-201ENST00000296098 DHRS11Q6UWP2 260 aa20.64■□□□□ 0.89
TRIM54-201ENST00000296098 FGF23Q9GZV9 251 aaPredicted RBP20.64■□□□□ 0.89
TRIM54-201ENST00000296098 OPA3Q9H6K4 179 aa20.64■□□□□ 0.89
TRIM54-201ENST00000296098 NUP50Q9UKX7 468 aa20.64■□□□□ 0.89
TRIM54-201ENST00000296098 STARD10Q9Y365 291 aa20.64■□□□□ 0.89
TRIM54-201ENST00000296098 DNAJC13O75165 2243 aa20.64■□□□□ 0.89
TRIM54-201ENST00000296098 SLC22A20A6NK97 555 aa20.63■□□□□ 0.89
TRIM54-201ENST00000296098 OR7C1O76099 320 aaPredicted RBP20.63■□□□□ 0.89
TRIM54-201ENST00000296098 HOXB5P09067 269 aa20.63■□□□□ 0.89
TRIM54-201ENST00000296098 LYL1P12980 280 aa20.63■□□□□ 0.89
TRIM54-201ENST00000296098 PMELP40967 661 aa20.63■□□□□ 0.89
TRIM54-201ENST00000296098 PDCD1Q15116 288 aa20.63■□□□□ 0.89
TRIM54-201ENST00000296098 CEACAM21Q3KPI0 293 aa20.63■□□□□ 0.89
TRIM54-201ENST00000296098 SAXO1Q8IYX7 474 aa20.63■□□□□ 0.89
TRIM54-201ENST00000296098 SUMF1Q8NBK3 374 aa20.63■□□□□ 0.89
TRIM54-201ENST00000296098 Q8NFD4 153 aa20.63■□□□□ 0.89
TRIM54-201ENST00000296098 MARS2Q96GW9 593 aaKnown RBP20.63■□□□□ 0.89
TRIM54-201ENST00000296098 NARFLQ9H6Q4 476 aa20.63■□□□□ 0.89
TRIM54-201ENST00000296098 ZNF442Q9H7R0 627 aa20.63■□□□□ 0.89
TRIM54-201ENST00000296098 TNRC6AQ8NDV7 1962 aaKnown RBP20.63■□□□□ 0.89
TRIM54-201ENST00000296098 PET100P0DJ07 73 aa20.63■□□□□ 0.89
TRIM54-201ENST00000296098 ZNF728P0DKX0 622 aa20.63■□□□□ 0.89
TRIM54-201ENST00000296098 GPM6AP51674 278 aa20.63■□□□□ 0.89
TRIM54-201ENST00000296098 SOX8P57073 446 aa20.63■□□□□ 0.89
TRIM54-201ENST00000296098 DAZAP2Q15038 168 aaPredicted RBP20.63■□□□□ 0.89
TRIM54-201ENST00000296098 DPPA2Q7Z7J5 298 aa20.63■□□□□ 0.89
TRIM54-201ENST00000296098 BATF2Q8N1L9 274 aa20.63■□□□□ 0.89
TRIM54-201ENST00000296098 TOMM40LQ969M1 308 aa20.63■□□□□ 0.89
TRIM54-201ENST00000296098 SLAMF9Q96A28 289 aa20.63■□□□□ 0.89
TRIM54-201ENST00000296098 ZDHHC11Q9H8X9 412 aa20.63■□□□□ 0.89
TRIM54-201ENST00000296098 TMA7Q9Y2S6 64 aaKnown RBP20.63■□□□□ 0.89
TRIM54-201ENST00000296098 MEMO1Q9Y316 297 aa20.63■□□□□ 0.89
TRIM54-201ENST00000296098 FAM90A10PA6NDY2 464 aa20.62■□□□□ 0.89
TRIM54-201ENST00000296098 FAM90A18PA6NE21 464 aa20.62■□□□□ 0.89
TRIM54-201ENST00000296098 FAM90A16PA6NEW6 464 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms