RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 RHOBP62745 196 aa8.84□□□□□ -1
COL6A3-201ENST00000295550 SLC35E4Q6ICL7 350 aa8.84□□□□□ -1
COL6A3-201ENST00000295550 NPAS1Q99742 590 aa8.84□□□□□ -1
COL6A3-201ENST00000295550 JAM3Q9BX67 310 aa8.84□□□□□ -1
COL6A3-201ENST00000295550 LPAR5Q9H1C0 372 aa8.84□□□□□ -1
COL6A3-201ENST00000295550 SRSF9Q13242 221 aaKnown RBP eCLIP8.83□□□□□ -1
COL6A3-201ENST00000295550 DHRS2Q13268 280 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 EXT1Q16394 746 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 TMEM147Q9BVK8 224 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 A0A1B0GX78 115 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 ADAM20O43506 726 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 ZNF426Q9BUY5 554 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 RBP4P02753 201 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 PTHLHP12272 177 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 MRPL37Q9BZE1 423 aaKnown RBP8.83□□□□□ -1
COL6A3-201ENST00000295550 PLEKHB1Q9UF11 243 aaPredicted RBP8.83□□□□□ -1
COL6A3-201ENST00000295550 ZNF256Q9Y2P7 627 aaPredicted RBP8.83□□□□□ -1
COL6A3-201ENST00000295550 V9GYH0 126 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 TANC2Q9HCD6 1990 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 TNCP24821 2201 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 A0A096LPE4 126 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 A0A1W2PPZ6 126 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 MED19A0JLT2 244 aaPredicted RBP8.83□□□□□ -1
COL6A3-201ENST00000295550 GZMMP51124 257 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 PRDX4Q13162 271 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 ACSM6Q6P461 480 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 PRSS37A4D1T9 235 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 DSCR3O14972 297 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 RAG2P55895 527 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 GNB2P62879 340 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 COL5A1-AS1Q5SY13 56 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 DOLPP1Q86YN1 238 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 TMEM191AQ9H0A3 160 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 SRD5A3Q9H8P0 318 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 SLC17A5Q9NRA2 495 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 OR4C46A6NHA9 309 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 LEUTXA8MZ59 168 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 KLRC4-KLRK1H3BQV0 150 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 FPR2P25090 351 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 SMUG1Q53HV7 270 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 ZDHHC22Q8N966 263 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 FKBP2P26885 142 aaKnown RBP8.83□□□□□ -1
COL6A3-201ENST00000295550 AVPR2P30518 371 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 MAMSTRQ6ZN01 415 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 OR4F17Q8NGA8 305 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 UQCC1Q9NVA1 299 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 THADAQ6YHU6 1953 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 NDUFB6O95139 128 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 CD40P25942 277 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 HAAOP46952 286 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 FAM27D1Q5T7N8 215 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 ZNF793Q6ZN11 406 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 TMEM116Q8NCL8 245 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 AGBL5Q8NDL9 886 aa8.83□□□□□ -1
COL6A3-201ENST00000295550 HIST3H3Q16695 136 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 ST3GAL2Q16842 350 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 HLA-BQ31612 363 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 NKAIN1Q4KMZ8 207 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 VWA2Q5GFL6 755 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 SPNS3Q6ZMD2 512 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 NRSN2Q9GZP1 204 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 NCKAP5O14513 1909 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 ACAA2P42765 397 aaKnown RBP8.82□□□□□ -1
COL6A3-201ENST00000295550 CD300CQ08708 224 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 LINC00696Q6ZRV3 163 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 SPICQ8N5J4 248 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 SLC37A2Q8TED4 501 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 MISP3Q96FF7 219 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 NEIL1Q96FI4 390 aaPredicted RBP8.82□□□□□ -1
COL6A3-201ENST00000295550 Q9N2K0 584 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 SLC45A2Q9UMX9 530 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 G6PCP35575 357 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 SLC37A1P57057 533 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 GUCA2AQ02747 115 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 CBLN2Q8IUK8 224 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 ZNF687Q8N1G0 1237 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 LINC00052Q96N35 136 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 RAB40CQ96S21 281 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 FBXO4Q9UKT5 387 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 SLC25A26Q70HW3 274 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 S1PR5Q9H228 398 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 CBR3O75828 277 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 CSN3P07498 182 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 BCL3P20749 454 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 AGERQ15109 404 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 ATP5SQ99766 215 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 SLCO1C1Q9NYB5 712 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 ICAM5Q9UMF0 924 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 RIF1Q5UIP0 2472 aaKnown RBP8.82□□□□□ -1
COL6A3-201ENST00000295550 ZNF716A6NP11 495 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 M0QZ24 198 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 ORM1P02763 201 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 OPRK1P41145 380 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 CAMPP49913 170 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 MRPL13Q9BYD1 178 aaKnown RBP8.82□□□□□ -1
COL6A3-201ENST00000295550 WSB2Q9NYS7 404 aaPredicted RBP8.82□□□□□ -1
COL6A3-201ENST00000295550 TMEM272A0A1B0GTI8 110 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 RRP8O43159 456 aaKnown RBP8.82□□□□□ -1
COL6A3-201ENST00000295550 RHBDL1O75783 438 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 CEBPDP49716 269 aaPredicted RBP8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms