RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 RAD51DO75771 328 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 HOXC12P31275 282 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 SCGB2B2Q4G0G5 96 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 SMUG1Q53HV7 270 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 OR52W1Q6IF63 320 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 ZDHHC23Q8IYP9 409 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 RBMXL3Q8N7X1 1067 aaKnown RBP13.19□□□□□ -0.3
SF3B4-201ENST00000271628 ZDHHC22Q8N966 263 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 C1orf162Q8NEQ5 155 aaPredicted RBP13.19□□□□□ -0.3
SF3B4-201ENST00000271628 OR4K15Q8NH41 348 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 ST8SIA4Q92187 359 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 SLC6A7Q99884 636 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 SCNM1Q9BWG6 230 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 PLEKHJ1Q9NW61 149 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 GLS2Q9UI32 602 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 LAMA5O15230 3695 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 TRAV14DV4A0A0A6YYC5 116 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 ZNHIT1O43257 154 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 LYZL6O75951 148 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 HOXD4P09016 255 aaPredicted RBP13.19□□□□□ -0.3
SF3B4-201ENST00000271628 FGF2P09038 288 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 SLC25A4P12235 298 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 ZNF14P17017 642 aaPredicted RBP13.19□□□□□ -0.3
SF3B4-201ENST00000271628 GABRR1P24046 479 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 CD34P28906 385 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 HRH1P35367 487 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 UBA52P62987 128 aaKnown RBP13.19□□□□□ -0.3
SF3B4-201ENST00000271628 PRDX4Q13162 271 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 ZNF345Q14585 488 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 SLC25A42Q86VD7 318 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 OSR2Q8N2R0 312 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 OR51F2Q8NH61 342 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 LINC00052Q96N35 136 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 HIST1H2AAQ96QV6 131 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 COMMD9Q9P000 198 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 DKK4Q9UBT3 224 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 HSF4Q9ULV5 492 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 PTPRZ1P23471 2315 aaPredicted RBP13.19□□□□□ -0.3
SF3B4-201ENST00000271628 URB1O60287 2271 aaKnown RBP13.18□□□□□ -0.3
SF3B4-201ENST00000271628 MBD3L4A6NDZ8 208 aaPredicted RBP13.18□□□□□ -0.3
SF3B4-201ENST00000271628 MBD3L3A6NE82 208 aaPredicted RBP13.18□□□□□ -0.3
SF3B4-201ENST00000271628 MBD3L5A6NJ08 208 aaPredicted RBP13.18□□□□□ -0.3
SF3B4-201ENST00000271628 OR2F2O95006 317 aa13.18□□□□□ -0.3
SF3B4-201ENST00000271628 PLATP00750 562 aa13.18□□□□□ -0.3
SF3B4-201ENST00000271628 HLA-AP01891 365 aaKnown RBP13.18□□□□□ -0.3
SF3B4-201ENST00000271628 COX5AP20674 150 aa13.18□□□□□ -0.3
SF3B4-201ENST00000271628 PTGER4P35408 488 aa13.18□□□□□ -0.3
SF3B4-201ENST00000271628 WNT5AP41221 380 aa13.18□□□□□ -0.3
SF3B4-201ENST00000271628 NHLH1Q02575 133 aa13.18□□□□□ -0.3
SF3B4-201ENST00000271628 OR2F1Q13607 317 aa13.18□□□□□ -0.3
SF3B4-201ENST00000271628 TUSC1Q2TAM9 212 aa13.18□□□□□ -0.3
SF3B4-201ENST00000271628 KRTCAP3Q53RY4 240 aa13.18□□□□□ -0.3
SF3B4-201ENST00000271628 FAHD2BQ6P2I3 314 aaPredicted RBP13.18□□□□□ -0.3
SF3B4-201ENST00000271628 OR5A2Q8NGI9 324 aa13.18□□□□□ -0.3
SF3B4-201ENST00000271628 OR1S1Q8NH92 325 aa13.18□□□□□ -0.3
SF3B4-201ENST00000271628 MBD3L2Q8NHZ7 208 aaPredicted RBP13.18□□□□□ -0.3
SF3B4-201ENST00000271628 FAHD2AQ96GK7 314 aa13.18□□□□□ -0.3
SF3B4-201ENST00000271628 SHARPINQ9H0F6 387 aa13.18□□□□□ -0.3
SF3B4-201ENST00000271628 GPR160Q9UJ42 338 aa13.18□□□□□ -0.3
SF3B4-201ENST00000271628 ANKRD30BLA7E2S9 258 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 CD300LBA8K4G0 201 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 WDR1O75083 606 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 CSN2P05814 226 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 CRHP06850 196 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 NKPD1Q17RQ9 610 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 EIF2S3LQ2VIR3 472 aaKnown RBP13.17□□□□□ -0.3
SF3B4-201ENST00000271628 VAX1Q5SQQ9 334 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 VWA1Q6PCB0 445 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 LYG2Q86SG7 212 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 HOGA1Q86XE5 327 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 ARRDC1Q8N5I2 433 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 BVESQ8NE79 360 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 FBXW5Q969U6 566 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 LHX6Q9UPM6 363 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 NOP16Q9Y3C1 178 aaKnown RBP13.17□□□□□ -0.3
SF3B4-201ENST00000271628 MPC1Q9Y5U8 109 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 DOCK7Q96N67 2140 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 PQLC2LA1A4F0 135 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 POM121CA8CG34 1229 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 SPDEFO95238 335 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 SPINK2P20155 84 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 ZBTB25P24278 435 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 PLEKHN1Q494U1 663 aaPredicted RBP13.17□□□□□ -0.3
SF3B4-201ENST00000271628 C11orf87Q6NUJ2 197 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 RTN4RL2Q86UN3 420 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 SAXO1Q8IYX7 474 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 KCNRGQ8N5I3 272 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 ZNF611Q8N823 705 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 DNTTIP1Q9H147 329 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 CDH20Q9HBT6 801 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 PROCRQ9UNN8 238 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 VSIG4Q9Y279 399 aa13.17□□□□□ -0.3
SF3B4-201ENST00000271628 IGKV1-12A0A0C4DH73 117 aa13.16□□□□□ -0.3
SF3B4-201ENST00000271628 FIGNL2A6NMB9 653 aa13.16□□□□□ -0.3
SF3B4-201ENST00000271628 IL2RAP01589 272 aa13.16□□□□□ -0.3
SF3B4-201ENST00000271628 IGKV1D-12P01611 117 aa13.16□□□□□ -0.3
SF3B4-201ENST00000271628 TAF9Q16594 264 aa13.16□□□□□ -0.3
SF3B4-201ENST00000271628 CALHM1Q8IU99 346 aa13.16□□□□□ -0.3
SF3B4-201ENST00000271628 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.16□□□□□ -0.3
SF3B4-201ENST00000271628 Q8NFD4 153 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms