RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 SLC16A12Q6ZSM3 486 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 OR5B12Q96R08 314 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 CNTD2Q9H8S5 307 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 STARD10Q9Y365 291 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 E9PLN8 166 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 JTBO76095 146 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 IFNA10P01566 189 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 FGF2P09038 288 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 FAM74A1Q5RGS3 127 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 CD200R1LQ6Q8B3 271 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 OR10V1Q8NGI7 309 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 OR10K1Q8NGX5 313 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 PINX1Q96BK5 328 aaKnown RBP11.93□□□□□ -0.5
LDLR-201ENST00000252444 TMEM68Q96MH6 324 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 VKORC1Q9BQB6 163 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 SCNM1Q9BWG6 230 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 HEYLQ9NQ87 328 aaPredicted RBP11.93□□□□□ -0.5
LDLR-201ENST00000252444 OR2S2Q9NQN1 319 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 PURGQ9UJV8 347 aaKnown RBP11.93□□□□□ -0.5
LDLR-201ENST00000252444 OR5H1A6NKK0 313 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 ZIC2O95409 532 aaPredicted RBP11.93□□□□□ -0.5
LDLR-201ENST00000252444 S100A6P06703 90 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 PMELP40967 661 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 PIP4P1Q86T03 277 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 NEU4Q8WWR8 484 aaPredicted RBP11.93□□□□□ -0.5
LDLR-201ENST00000252444 CNTNAP3BQ96NU0 1288 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 CLDN1O95832 211 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 TIMP3P35625 211 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 DOLPP1Q86YN1 238 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 FAM219AQ8IW50 185 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 LRRC75AQ8NAA5 344 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 SCMH1Q96GD3 660 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 POM121L2Q96KW2 1035 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 COMMD5Q9GZQ3 224 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 RBM38Q9H0Z9 239 aaKnown RBP11.93□□□□□ -0.5
LDLR-201ENST00000252444 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.93□□□□□ -0.58e-6■■■■□ 26.5
LDLR-201ENST00000252444 HSF4Q9ULV5 492 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 COL4A4P53420 1690 aaPredicted RBP11.93□□□□□ -0.5
LDLR-201ENST00000252444 ANKRD20A5PA0PJZ0 165 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 PPIHO43447 177 aaKnown RBP11.92□□□□□ -0.5
LDLR-201ENST00000252444 SPRY1O43609 319 aaPredicted RBP11.92□□□□□ -0.5
LDLR-201ENST00000252444 ZIC3O60481 467 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 C1QBP02746 253 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 OMGP23515 440 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 HRH1P35367 487 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 HYAL4Q2M3T9 481 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 UNQ9370/PRO34162Q6UXP9 181 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 NXF2Q9GZY0 626 aaKnown RBP11.92□□□□□ -0.5
LDLR-201ENST00000252444 HSPB6O14558 160 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 TTRP02766 147 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 RPS27P42677 84 aaKnown RBP11.92□□□□□ -0.5
LDLR-201ENST00000252444 TAS2R45P59539 299 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 BPIFB3P59826 476 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 TSC22D1Q15714 1073 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 ACSF3Q4G176 576 aaPredicted RBP11.92□□□□□ -0.5
LDLR-201ENST00000252444 MFSD4AQ8N468 514 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 PRR7Q8TB68 274 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 SRXN1Q9BYN0 137 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 A0A0B4J2A0 478 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 CHATP28329 748 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 SUCLG1P53597 346 aaKnown RBP11.92□□□□□ -0.5
LDLR-201ENST00000252444 WDYHV1Q96HA8 205 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 SHPKQ9UHJ6 478 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 OR4E1P0C645 316 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 SULT1A3P0DMM9 295 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 SULT1A4P0DMN0 295 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 FGF12P61328 243 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 GPA33Q99795 319 aa11.92□□□□□ -0.5
LDLR-201ENST00000252444 PPIL3Q9H2H8 161 aaKnown RBP11.92□□□□□ -0.5
LDLR-201ENST00000252444 K7EQM0 130 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 SPACA3Q8IXA5 215 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 RNF141Q8WVD5 230 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 RTN4IP1Q8WWV3 396 aaPredicted RBP11.91□□□□□ -0.5
LDLR-201ENST00000252444 ZNF552Q9H707 407 aaPredicted RBP11.91□□□□□ -0.5
LDLR-201ENST00000252444 SDCBPO00560 298 aaPredicted RBP11.91□□□□□ -0.5
LDLR-201ENST00000252444 MGST3O14880 152 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 RPS2P15880 293 aaKnown RBP11.91□□□□□ -0.5
LDLR-201ENST00000252444 HLA-DRB3P79483 266 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 AKR1C1Q04828 323 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 HIKESHIQ53FT3 197 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 SPATA46Q5T0L3 261 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 SEZ6L2Q6UXD5 910 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 RBMXL3Q8N7X1 1067 aaKnown RBP11.91□□□□□ -0.5
LDLR-201ENST00000252444 RNASE6Q93091 150 aaKnown RBP11.91□□□□□ -0.5
LDLR-201ENST00000252444 RAB40CQ96S21 281 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 PPIAL4EA0A075B759 164 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 PPIAL4DF5H284 164 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 CTSBP07858 339 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 PPIAL4FP0DN26 164 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 TGIF1Q15583 401 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 ATP6V1FQ16864 119 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 DBX2Q6ZNG2 339 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 OR4C16Q8NGL9 310 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 OR4S2Q8NH73 311 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 PIPOXQ9P0Z9 390 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 PPIAL4AQ9Y536 164 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 CNIH1O95406 144 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 DAOP14920 347 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 ERVFRD-1P60508 538 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 SNTB1Q13884 538 aaKnown RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms