RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 DOCK11Q5JSL3 2073 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 PLXNA3P51805 1871 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 LINC01553A4QN01 128 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 SSSCA1O60232 199 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 CCKARP32238 428 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 SFTPDP35247 375 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 KRTDAPP60985 99 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 ZNF266Q14584 549 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 Q8NFD4 153 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 LNP1A1A4G5 178 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 K7N7A8 449 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 CDC14BO60729 498 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 SERPINA7P05543 415 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 HINT1P49773 126 aaPredicted RBP12.91□□□□□ -0.34
PTPRA-201ENST00000216877 FAM3BP58499 235 aaPredicted RBP12.91□□□□□ -0.34
PTPRA-201ENST00000216877 SLC7A9P82251 487 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 DCXRQ7Z4W1 244 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 ST6GALNAC3Q8NDV1 305 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 RNASEH2CQ8TDP1 164 aaKnown RBP12.91□□□□□ -0.34
PTPRA-201ENST00000216877 SPACA7Q96KW9 195 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 TSPAN32Q96QS1 320 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 ZPBPQ9BS86 351 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 TMEM74BQ9NUR3 256 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 ZFP30Q9Y2G7 519 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 GRIFINA4D1Z8 144 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 ZNF264O43296 627 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 RUNX2Q13950 521 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 FAM166AQ6J272 317 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 NUFIP2Q7Z417 695 aaKnown RBP12.9□□□□□ -0.34
PTPRA-201ENST00000216877 GBGT1Q8N5D6 347 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 SRD5A3Q9H8P0 318 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 STARD5Q9NSY2 213 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 B3GAT1Q9P2W7 334 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 COA3Q9Y2R0 106 aaPredicted RBP12.9□□□□□ -0.34
PTPRA-201ENST00000216877 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.9□□□□□ -0.34
PTPRA-201ENST00000216877 LTBP2Q14767 1821 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 SPTBN2O15020 2390 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 PLXNB3Q9ULL4 1909 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 TMEM210A6NLX4 147 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 CCL25O15444 150 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 PHF1O43189 567 aaPredicted RBP12.9□□□□□ -0.34
PTPRA-201ENST00000216877 HIST1H1DP16402 221 aaKnown RBP12.9□□□□□ -0.34
PTPRA-201ENST00000216877 CHRNA7P36544 502 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 EWSR1Q01844 656 aaKnown RBP eCLIP12.9□□□□□ -0.34
PTPRA-201ENST00000216877 OR52E1Q8NGJ3 308 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 KTI12Q96EK9 354 aaPredicted RBP12.9□□□□□ -0.34
PTPRA-201ENST00000216877 FOXQ1Q9C009 403 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 ZNF552Q9H707 407 aaPredicted RBP12.9□□□□□ -0.34
PTPRA-201ENST00000216877 CCL26Q9Y258 94 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 RAD51DO75771 328 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 LYL1P12980 280 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 ARHGAP19Q14CB8 494 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 ATP6V1FQ16864 119 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 SPIN3Q5JUX0 258 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 SLC35E1Q96K37 410 aa12.9□□□□□ -0.34
PTPRA-201ENST00000216877 ZNF106Q9H2Y7 1883 aaKnown RBP12.89□□□□□ -0.35
PTPRA-201ENST00000216877 SLC31A1O15431 190 aa12.89□□□□□ -0.35
PTPRA-201ENST00000216877 Q6ZN92 141 aa12.89□□□□□ -0.35
PTPRA-201ENST00000216877 PRSS41Q7RTY9 318 aa12.89□□□□□ -0.35
PTPRA-201ENST00000216877 ZNF845Q96IR2 970 aaPredicted RBP12.89□□□□□ -0.35
PTPRA-201ENST00000216877 TWSG1Q9GZX9 223 aa12.89□□□□□ -0.35
PTPRA-201ENST00000216877 CHD9Q3L8U1 2897 aa12.89□□□□□ -0.35
PTPRA-201ENST00000216877 PDGFBP01127 241 aaPredicted RBP12.89□□□□□ -0.35
PTPRA-201ENST00000216877 HSPB1P04792 205 aaKnown RBP12.89□□□□□ -0.35
PTPRA-201ENST00000216877 DBHP09172 617 aa12.89□□□□□ -0.35
PTPRA-201ENST00000216877 LMO1P25800 156 aa12.89□□□□□ -0.35
PTPRA-201ENST00000216877 OR3A4PP47883 348 aa12.89□□□□□ -0.35
PTPRA-201ENST00000216877 PLAC9Q5JTB6 97 aa12.89□□□□□ -0.35
PTPRA-201ENST00000216877 ZNF787Q6DD87 383 aa12.89□□□□□ -0.35
PTPRA-201ENST00000216877 OR5D14Q8NGL3 314 aa12.89□□□□□ -0.35
PTPRA-201ENST00000216877 OR9A4Q8NGU2 314 aa12.89□□□□□ -0.35
PTPRA-201ENST00000216877 RTN4IP1Q8WWV3 396 aaPredicted RBP12.89□□□□□ -0.35
PTPRA-201ENST00000216877 ZNF775Q96BV0 537 aaPredicted RBP12.89□□□□□ -0.35
PTPRA-201ENST00000216877 ALKBH3Q96Q83 286 aaPredicted RBP12.89□□□□□ -0.35
PTPRA-201ENST00000216877 MIEN1Q9BRT3 115 aa12.89□□□□□ -0.35
PTPRA-201ENST00000216877 HCRTR2O43614 444 aa12.89□□□□□ -0.35
PTPRA-201ENST00000216877 GSTP1P09211 210 aaKnown RBP12.89□□□□□ -0.35
PTPRA-201ENST00000216877 PAX1P15863 534 aa12.89□□□□□ -0.35
PTPRA-201ENST00000216877 TMEM183BQ1AE95 376 aa12.89□□□□□ -0.35
PTPRA-201ENST00000216877 FAM57BQ71RH2 274 aa12.89□□□□□ -0.35
PTPRA-201ENST00000216877 SLC39A11Q8N1S5 342 aa12.89□□□□□ -0.35
PTPRA-201ENST00000216877 AQP7P3A6NL99 342 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 DMWDQ09019 674 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 ZNF74Q16587 644 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 SPSB3Q6PJ21 355 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 UNQ5815/PRO19632Q6UWF5 114 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 TMPRSS7Q7RTY8 843 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 OR2C3Q8N628 320 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 NKAIN3Q8N8D7 197 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 ADPRHL1Q8NDY3 354 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 OR10S1Q8NGN2 331 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 OVCA2Q8WZ82 227 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 ADAT3Q96EY9 351 aaPredicted RBP12.88□□□□□ -0.35
PTPRA-201ENST00000216877 ZNF764Q96H86 408 aaPredicted RBP12.88□□□□□ -0.35
PTPRA-201ENST00000216877 ATP5SQ99766 215 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 SLC46A2Q9BY10 475 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 MTCL1Q9Y4B5 1905 aaKnown RBP12.88□□□□□ -0.35
PTPRA-201ENST00000216877 A0A1B0GU03 582 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 C17orf105B2RV13 164 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 HBE1P02100 147 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms