RNA–Protein interactions for RNA: ENST00000636876.1

CLN6-216, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 655 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-216ENST00000636876 TNFAIP8L1Q8WVP5 186 aa13.41□□□□□ -0.26
CLN6-216ENST00000636876 SLAMF9Q96A28 289 aa13.41□□□□□ -0.26
CLN6-216ENST00000636876 CEP19Q96LK0 163 aa13.41□□□□□ -0.26
CLN6-216ENST00000636876 NKX3-1Q99801 234 aaPredicted RBP13.41□□□□□ -0.26
CLN6-216ENST00000636876 WDR13Q9H1Z4 485 aa13.41□□□□□ -0.26
CLN6-216ENST00000636876 TMEM165Q9HC07 324 aa13.41□□□□□ -0.26
CLN6-216ENST00000636876 MTCH1Q9NZJ7 389 aa13.41□□□□□ -0.26
CLN6-216ENST00000636876 GSTK1Q9Y2Q3 226 aa13.41□□□□□ -0.26
CLN6-216ENST00000636876 ACANP16112 2415 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 TRAV38-1A0A0B4J264 116 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 IGKV1-12A0A0C4DH73 117 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 LOC100506127A0A0U1RQW1 187 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 TRAPPC2LH3BP13 241 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 ANGPTL7O43827 346 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 NXPH2O95156 264 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 IGKV1D-12P01611 117 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 USF1P22415 310 aaPredicted RBP13.4□□□□□ -0.26
CLN6-216ENST00000636876 GLRA1P23415 457 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 MYL9P24844 172 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 PTGFRP43088 359 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 OR3A4PP47883 348 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 ERVK11-1P61568 191 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 ZNF404Q494X3 552 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 SFRP4Q6FHJ7 346 aaPredicted RBP13.4□□□□□ -0.26
CLN6-216ENST00000636876 GDPGP1Q6ZNW5 385 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 Q8IYB0 196 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 MUC20Q8N307 709 aaPredicted RBP13.4□□□□□ -0.26
CLN6-216ENST00000636876 PNLDC1Q8NA58 520 aaKnown RBP13.4□□□□□ -0.26
CLN6-216ENST00000636876 CLDND2Q8NHS1 167 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 SEH1LQ96EE3 360 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 GAL3ST1Q99999 423 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 TMEM246Q9BRR3 403 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 NARFLQ9H6Q4 476 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 RASL12Q9NYN1 266 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 SCOCQ9UIL1 159 aa13.4□□□□□ -0.26
CLN6-216ENST00000636876 NF1P21359 2839 aa13.4□□□□□ -0.27
CLN6-216ENST00000636876 IGHV3OR15-7A0A075B7D8 119 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 SHISA3A0PJX4 238 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 AIREO43918 545 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 CD37P11049 281 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 MUC1P15941 1255 aaPredicted RBP13.39□□□□□ -0.27
CLN6-216ENST00000636876 BCL3P20749 454 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 LOXL1Q08397 574 aaPredicted RBP13.39□□□□□ -0.27
CLN6-216ENST00000636876 KCNJ8Q15842 424 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 MICBQ29980 383 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 SMIM21Q3B7S5 101 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 GLT8D1Q68CQ7 371 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 ASCL4Q6XD76 172 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 ACP7Q6ZNF0 438 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 C1QL2Q7Z5L3 287 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 GPR141Q7Z602 305 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 FAM90A1Q86YD7 464 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 BATF2Q8N1L9 274 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 SPICQ8N5J4 248 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 PXT1Q8NFP0 134 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 FOXRED1Q96CU9 486 aaPredicted RBP13.39□□□□□ -0.27
CLN6-216ENST00000636876 GFI1Q99684 422 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 UQCC2Q9BRT2 126 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 FUNDC2Q9BWH2 189 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 FAM192AQ9GZU8 254 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 CNTD2Q9H8S5 307 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 HES4Q9HCC6 221 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 SMURF1Q9HCE7 757 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 DNAJB11Q9UBS4 358 aa13.39□□□□□ -0.27
CLN6-216ENST00000636876 F8VVB4 439 aa13.38□□□□□ -0.27
CLN6-216ENST00000636876 F8VWA3 439 aa13.38□□□□□ -0.27
CLN6-216ENST00000636876 H7C1Q1 480 aa13.38□□□□□ -0.27
CLN6-216ENST00000636876 KDM4BO94953 1096 aa13.38□□□□□ -0.27
CLN6-216ENST00000636876 RPL5P46777 297 aaKnown RBP13.38□□□□□ -0.27
CLN6-216ENST00000636876 NPBWR2P48146 333 aa13.38□□□□□ -0.27
CLN6-216ENST00000636876 LMO4P61968 165 aa13.38□□□□□ -0.27
CLN6-216ENST00000636876 C1orf100Q5SVJ3 147 aa13.38□□□□□ -0.27
CLN6-216ENST00000636876 C12orf43Q96C57 262 aaKnown RBP13.38□□□□□ -0.27
CLN6-216ENST00000636876 KCTD7Q96MP8 289 aa13.38□□□□□ -0.27
CLN6-216ENST00000636876 CENPOQ9BU64 300 aa13.38□□□□□ -0.27
CLN6-216ENST00000636876 RBFOX1Q9NWB1 397 aaKnown RBP13.38□□□□□ -0.27
CLN6-216ENST00000636876 NLKQ9UBE8 527 aa13.38□□□□□ -0.27
CLN6-216ENST00000636876 MRPS28Q9Y2Q9 187 aaKnown RBP13.38□□□□□ -0.27
CLN6-216ENST00000636876 AK6Q9Y3D8 172 aaKnown RBP13.38□□□□□ -0.27
CLN6-216ENST00000636876 CEACAM18A8MTB9 384 aa13.37□□□□□ -0.27
CLN6-216ENST00000636876 PDCD5O14737 125 aa13.37□□□□□ -0.27
CLN6-216ENST00000636876 TNFRSF13BO14836 293 aaPredicted RBP13.37□□□□□ -0.27
CLN6-216ENST00000636876 NDUFA2O43678 99 aa13.37□□□□□ -0.27
CLN6-216ENST00000636876 IGHV2-5P01817 119 aa13.37□□□□□ -0.27
CLN6-216ENST00000636876 GYPAP02724 150 aa13.37□□□□□ -0.27
CLN6-216ENST00000636876 MTNR1BP49286 362 aa13.37□□□□□ -0.27
CLN6-216ENST00000636876 STUMQ69YW2 141 aa13.37□□□□□ -0.27
CLN6-216ENST00000636876 DCDC5Q6ZRR9 648 aa13.37□□□□□ -0.27
CLN6-216ENST00000636876 CIARTQ8N365 385 aaPredicted RBP13.37□□□□□ -0.27
CLN6-216ENST00000636876 MAPK1IP1LQ8NDC0 245 aa13.37□□□□□ -0.27
CLN6-216ENST00000636876 OR4D6Q8NGJ1 314 aa13.37□□□□□ -0.27
CLN6-216ENST00000636876 EMG1Q92979 244 aaKnown RBP13.37□□□□□ -0.27
CLN6-216ENST00000636876 RNF167Q9H6Y7 350 aa13.37□□□□□ -0.27
CLN6-216ENST00000636876 ELL3Q9HB65 397 aaPredicted RBP13.37□□□□□ -0.27
CLN6-216ENST00000636876 PATZ1Q9HBE1 687 aaKnown RBP13.37□□□□□ -0.27
CLN6-216ENST00000636876 RHOFQ9HBH0 211 aa13.37□□□□□ -0.27
CLN6-216ENST00000636876 IL36GQ9NZH8 169 aa13.37□□□□□ -0.27
CLN6-216ENST00000636876 PCDHB10Q9UN67 800 aa13.37□□□□□ -0.27
CLN6-216ENST00000636876 ING4Q9UNL4 249 aa13.37□□□□□ -0.27
CLN6-216ENST00000636876 CR1P17927 2039 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms