RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 OR14K1Q8NGZ2 314 aa13.06□□□□□ -0.32
CLN3-246ENST00000636228 TRMT10AQ8TBZ6 339 aaKnown RBP13.06□□□□□ -0.32
CLN3-246ENST00000636228 ASB17Q8WXJ9 295 aa13.06□□□□□ -0.32
CLN3-246ENST00000636228 OR5M11Q96RB7 305 aa13.06□□□□□ -0.32
CLN3-246ENST00000636228 RANBP3Q9H6Z4 567 aaPredicted RBP13.06□□□□□ -0.32
CLN3-246ENST00000636228 SLC22A13Q9Y226 551 aa13.06□□□□□ -0.32
CLN3-246ENST00000636228 TMEM14AQ9Y6G1 99 aa13.06□□□□□ -0.32
CLN3-246ENST00000636228 hCG_1809904A0A1W2PP81 198 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 A0A1W2PPE2 198 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 FAM230AA0A1W2PPH8 454 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 A0A1W2PR64 198 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 A0A1W2PRV1 198 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 FAM90A8PA6NJQ4 464 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 LOC110117498-PIK3R3F6TDL0 507 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 F8VVB4 439 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 F8VWA3 439 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 NOS1APO75052 506 aaPredicted RBP13.05□□□□□ -0.32
CLN3-246ENST00000636228 FKBP6O75344 327 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 ARG1P05089 322 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 DAPP51397 102 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 DLX6P56179 175 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 COL10A1Q03692 680 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 PTGES3Q15185 160 aaKnown RBP13.05□□□□□ -0.32
CLN3-246ENST00000636228 KPRPQ5T749 579 aaPredicted RBP13.05□□□□□ -0.32
CLN3-246ENST00000636228 BCL2L15Q5TBC7 163 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 TMEM42Q69YG0 159 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 C11orf88Q6PI97 169 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 ZNF322Q6U7Q0 402 aaPredicted RBP13.05□□□□□ -0.32
CLN3-246ENST00000636228 Q6ZPA2 131 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 SLC35F2Q8IXU6 374 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 ELMOD2Q8IZ81 293 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 ASCC1Q8N9N2 400 aaKnown RBP13.05□□□□□ -0.32
CLN3-246ENST00000636228 CCDC197Q8NCU1 140 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 CNN2Q99439 309 aaKnown RBP13.05□□□□□ -0.32
CLN3-246ENST00000636228 MMP28Q9H239 520 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 PAPOLBQ9NRJ5 636 aaKnown RBP13.05□□□□□ -0.32
CLN3-246ENST00000636228 SERTAD4Q9NUC0 356 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 DNAJB9Q9UBS3 223 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 OR52A1Q9UKL2 312 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 POLDIP2Q9Y2S7 368 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 R4GMQ9 66 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 V9GYS6 101 aa13.05□□□□□ -0.32
CLN3-246ENST00000636228 TET2Q6N021 2002 aaPredicted RBP13.05□□□□□ -0.32
CLN3-246ENST00000636228 C17orf98A8MV24 154 aa13.04□□□□□ -0.32
CLN3-246ENST00000636228 DLGAP1O14490 977 aa13.04□□□□□ -0.32
CLN3-246ENST00000636228 MITFO75030 526 aaPredicted RBP13.04□□□□□ -0.32
CLN3-246ENST00000636228 FAM107AO95990 144 aa13.04□□□□□ -0.32
CLN3-246ENST00000636228 SSX2Q16385 188 aa13.04□□□□□ -0.32
CLN3-246ENST00000636228 Q6ZS46 218 aa13.04□□□□□ -0.32
CLN3-246ENST00000636228 MEPCEQ7L2J0 689 aaKnown RBP13.04□□□□□ -0.32
CLN3-246ENST00000636228 HES4Q9HCC6 221 aa13.04□□□□□ -0.32
CLN3-246ENST00000636228 MRM2Q9UI43 246 aaKnown RBP13.04□□□□□ -0.32
CLN3-246ENST00000636228 TCF19Q9Y242 345 aa13.04□□□□□ -0.32
CLN3-246ENST00000636228 A6NDX4 124 aa13.03□□□□□ -0.32
CLN3-246ENST00000636228 K7N7A8 449 aa13.03□□□□□ -0.32
CLN3-246ENST00000636228 FBXO24O75426 580 aa13.03□□□□□ -0.32
CLN3-246ENST00000636228 RPP14O95059 124 aaKnown RBP13.03□□□□□ -0.32
CLN3-246ENST00000636228 MPZP25189 248 aa13.03□□□□□ -0.32
CLN3-246ENST00000636228 EDDM3BP56851 147 aa13.03□□□□□ -0.32
CLN3-246ENST00000636228 ERVK11-1P61568 191 aa13.03□□□□□ -0.32
CLN3-246ENST00000636228 DYNC1I2Q13409 638 aaKnown RBP13.03□□□□□ -0.32
CLN3-246ENST00000636228 FLOT2Q14254 428 aa13.03□□□□□ -0.32
CLN3-246ENST00000636228 LIAT1Q6ZQX7 453 aa13.03□□□□□ -0.32
CLN3-246ENST00000636228 SSX6Q7RTT6 188 aa13.03□□□□□ -0.32
CLN3-246ENST00000636228 TCEANCQ8N8B7 351 aa13.03□□□□□ -0.32
CLN3-246ENST00000636228 ITFG2Q969R8 447 aa13.03□□□□□ -0.32
CLN3-246ENST00000636228 TBX5Q99593 518 aa13.03□□□□□ -0.32
CLN3-246ENST00000636228 CDCA4Q9BXL8 241 aa13.03□□□□□ -0.32
CLN3-246ENST00000636228 ADGRL4Q9HBW9 690 aa13.03□□□□□ -0.32
CLN3-246ENST00000636228 ABCB10Q9NRK6 738 aa13.03□□□□□ -0.32
CLN3-246ENST00000636228 VGLL3A8MV65 326 aa13.02□□□□□ -0.33
CLN3-246ENST00000636228 ODF3BA8MYP8 253 aa13.02□□□□□ -0.33
CLN3-246ENST00000636228 ZNF670-ZNF695F2Z2N8 137 aa13.02□□□□□ -0.33
CLN3-246ENST00000636228 ZNF728P0DKX0 622 aa13.02□□□□□ -0.33
CLN3-246ENST00000636228 EPHA2P29317 976 aa13.02□□□□□ -0.33
CLN3-246ENST00000636228 BLCAPP62952 87 aa13.02□□□□□ -0.33
CLN3-246ENST00000636228 AADACL4Q5VUY2 407 aa13.02□□□□□ -0.33
CLN3-246ENST00000636228 FAHD1Q6P587 224 aa13.02□□□□□ -0.33
CLN3-246ENST00000636228 TPRX1Q8N7U7 411 aa13.02□□□□□ -0.33
CLN3-246ENST00000636228 OR13D1Q8NGV5 346 aa13.02□□□□□ -0.33
CLN3-246ENST00000636228 SLAMF9Q96A28 289 aa13.02□□□□□ -0.33
CLN3-246ENST00000636228 R3HDM4Q96D70 268 aa13.02□□□□□ -0.33
CLN3-246ENST00000636228 IL4I1Q96RQ9 567 aa13.02□□□□□ -0.33
CLN3-246ENST00000636228 CITED2Q99967 270 aaPredicted RBP13.02□□□□□ -0.33
CLN3-246ENST00000636228 CADM1Q9BY67 442 aaKnown RBP13.02□□□□□ -0.33
CLN3-246ENST00000636228 MTCH1Q9NZJ7 389 aa13.02□□□□□ -0.33
CLN3-246ENST00000636228 H2AFY2Q9P0M6 372 aaPredicted RBP13.02□□□□□ -0.33
CLN3-246ENST00000636228 HILPDAQ9Y5L2 63 aa13.02□□□□□ -0.33
CLN3-246ENST00000636228 SNX5Q9Y5X3 404 aa13.02□□□□□ -0.33
CLN3-246ENST00000636228 IGKV1-27A0A075B6S5 117 aa13.01□□□□□ -0.33
CLN3-246ENST00000636228 TCRBV3S1A0A5B6 114 aa13.01□□□□□ -0.33
CLN3-246ENST00000636228 TMEM82A0PJX8 343 aa13.01□□□□□ -0.33
CLN3-246ENST00000636228 ADARB2-AS1A8MUL3 147 aa13.01□□□□□ -0.33
CLN3-246ENST00000636228 ZNF737O75373 536 aa13.01□□□□□ -0.33
CLN3-246ENST00000636228 APOL3O95236 402 aa13.01□□□□□ -0.33
CLN3-246ENST00000636228 IGHV1-8P0DP01 117 aa13.01□□□□□ -0.33
CLN3-246ENST00000636228 IL24Q13007 206 aa13.01□□□□□ -0.33
CLN3-246ENST00000636228 EDDM3AQ14507 147 aa13.01□□□□□ -0.33
CLN3-246ENST00000636228 CNN3Q15417 329 aaKnown RBP13.01□□□□□ -0.33
CLN3-246ENST00000636228 UBE2V2Q15819 145 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms