RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 GGNQ86UU5 652 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 FAM219AQ8IW50 185 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 GALNT14Q96FL9 552 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 TLNRD1Q9H1K6 362 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 RBP2P50120 134 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 ABLIM2Q6H8Q1 611 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 OR2A2Q6IF42 318 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 H3F3CQ6NXT2 135 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 BTNL8Q6UX41 500 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 SPAG16Q8N0X2 631 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 LRTM2Q8N967 370 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 MRPL24Q96A35 216 aaKnown RBP11.09□□□□□ -0.63
LINC00540-203ENST00000631321 PRRX2Q99811 253 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 CMSS1Q9BQ75 279 aaKnown RBP11.09□□□□□ -0.63
LINC00540-203ENST00000631321 RGCCQ9H4X1 137 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 RHOFQ9HBH0 211 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 CRLF2Q9HC73 371 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 TREM1Q9NP99 234 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 EML6Q6ZMW3 1958 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 FAM230AA0A1W2PPH8 454 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 K7EPK0 472 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 SPRY1O43609 319 aaPredicted RBP11.09□□□□□ -0.63
LINC00540-203ENST00000631321 SNAPINO95295 136 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 FOLR3P41439 243 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 LPAR6P43657 344 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 TMEM187Q14656 261 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 SMCO1Q147U7 214 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 RIPPLY2Q5TAB7 128 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 WDR5BQ86VZ2 330 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 FAM71E2Q8N5Q1 922 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 ADGRG7Q96K78 797 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 NRIP2Q9BQI9 281 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 SULT4A1Q9BR01 284 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 NAA60Q9H7X0 242 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 ZNF581Q9P0T4 197 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 RCC2Q9P258 522 aaKnown RBP11.09□□□□□ -0.63
LINC00540-203ENST00000631321 AMDHD2Q9Y303 409 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 PRELID3BQ9Y3B1 194 aa11.09□□□□□ -0.63
LINC00540-203ENST00000631321 JTBO76095 146 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 LCATP04180 440 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 MUC1P15941 1255 aaPredicted RBP11.08□□□□□ -0.64
LINC00540-203ENST00000631321 ZNF32P17041 273 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 RCC1P18754 421 aaPredicted RBP11.08□□□□□ -0.64
LINC00540-203ENST00000631321 CARD18P57730 90 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 OR10Z1Q8NGY1 313 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 BORCS8Q96FH0 119 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 WNT5BQ9H1J7 359 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 HRH4Q9H3N8 390 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 PLEKHA2Q9HB19 425 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 PARP11Q9NR21 331 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 FBXL17Q9UF56 701 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 TIMM10BQ9Y5J6 103 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 POMT1Q9Y6A1 747 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 PI4KAP42356 2102 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 IGKV1-12A0A0C4DH73 117 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 A0A0G2JMM0 328 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 hCG_38984A0A1B0GV85 526 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 A0A1W2PPB8 328 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 A0A1W2PRS3 328 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 KIR3DP1A8MWS1 328 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 NRASP01111 189 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 IGKV1D-12P01611 117 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 IGHEP01854 428 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 ZNF728P0DKX0 622 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 FCGR2CP31995 323 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 DUSP3P51452 185 aaPredicted RBP11.08□□□□□ -0.64
LINC00540-203ENST00000631321 RRADP55042 308 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 PIGPP57054 158 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 PSG4Q00888 419 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 CHAF1BQ13112 559 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 PEAR1Q5VY43 1037 aaPredicted RBP11.08□□□□□ -0.64
LINC00540-203ENST00000631321 HAGHLQ6PII5 290 aaPredicted RBP11.08□□□□□ -0.64
LINC00540-203ENST00000631321 YRDCQ86U90 279 aaKnown RBP11.08□□□□□ -0.64
LINC00540-203ENST00000631321 ESX1Q8N693 406 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 LYPD6BQ8NI32 183 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 OR2H1Q9GZK4 316 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 ARV1Q9H2C2 271 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 PRO3102Q9H379 93 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 BCO1Q9HAY6 547 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 PLA2G2EQ9NZK7 142 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 KCNIP3Q9Y2W7 256 aa11.08□□□□□ -0.64
LINC00540-203ENST00000631321 KLF2Q9Y5W3 355 aaPredicted RBP11.08□□□□□ -0.64
LINC00540-203ENST00000631321 TNRC6BQ9UPQ9 1833 aaKnown RBP11.07□□□□□ -0.64
LINC00540-203ENST00000631321 MED6O75586 246 aa11.07□□□□□ -0.64
LINC00540-203ENST00000631321 P04436 131 aa11.07□□□□□ -0.64
LINC00540-203ENST00000631321 CD5P06127 495 aa11.07□□□□□ -0.64
LINC00540-203ENST00000631321 TDGF1P13385 188 aa11.07□□□□□ -0.64
LINC00540-203ENST00000631321 PMELP40967 661 aa11.07□□□□□ -0.64
LINC00540-203ENST00000631321 HTR5AP47898 357 aa11.07□□□□□ -0.64
LINC00540-203ENST00000631321 FUT6P51993 359 aa11.07□□□□□ -0.64
LINC00540-203ENST00000631321 FAM3AP98173 230 aa11.07□□□□□ -0.64
LINC00540-203ENST00000631321 TMEM88Q6PEY1 159 aa11.07□□□□□ -0.64
LINC00540-203ENST00000631321 AAED1Q7RTV5 226 aa11.07□□□□□ -0.64
LINC00540-203ENST00000631321 OSR2Q8N2R0 312 aa11.07□□□□□ -0.64
LINC00540-203ENST00000631321 UBAC2Q8NBM4 344 aa11.07□□□□□ -0.64
LINC00540-203ENST00000631321 OR10AD1Q8NGE0 317 aa11.07□□□□□ -0.64
LINC00540-203ENST00000631321 AKR7LQ8NHP1 331 aa11.07□□□□□ -0.64
LINC00540-203ENST00000631321 POM121Q96HA1 1249 aa11.07□□□□□ -0.64
LINC00540-203ENST00000631321 ADAT1Q9BUB4 502 aaKnown RBP11.07□□□□□ -0.64
LINC00540-203ENST00000631321 SUCNR1Q9BXA5 334 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms