RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 MSI2Q96DH6 328 aaKnown RBP12.33□□□□□ -0.44
PNKP-221ENST00000627317 MRPS26Q9BYN8 205 aaKnown RBP12.33□□□□□ -0.44
PNKP-221ENST00000627317 SLITRK2Q9H156 845 aa12.33□□□□□ -0.44
PNKP-221ENST00000627317 YAE1D1Q9NRH1 226 aa12.33□□□□□ -0.44
PNKP-221ENST00000627317 TMEM160Q9NX00 188 aa12.33□□□□□ -0.44
PNKP-221ENST00000627317 DNAJB11Q9UBS4 358 aa12.33□□□□□ -0.44
PNKP-221ENST00000627317 IGHV3OR15-7A0A075B7D8 119 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 WNT9BO14905 357 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 NXPH2O95156 264 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 LHBP01229 141 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 MAS1P04201 325 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 ALDOBP05062 364 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 JUNBP17275 347 aaPredicted RBP12.32□□□□□ -0.44
PNKP-221ENST00000627317 GLRA1P23415 457 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 IL2RGP31785 369 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 PDZK1IP1Q13113 114 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 MICBQ29980 383 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 SMIM21Q3B7S5 101 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 TMEM155Q4W5P6 130 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 CYB5R2Q6BCY4 276 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 SFRP4Q6FHJ7 346 aaPredicted RBP12.32□□□□□ -0.44
PNKP-221ENST00000627317 LRRC28Q86X40 367 aaPredicted RBP12.32□□□□□ -0.44
PNKP-221ENST00000627317 MKXQ8IYA7 352 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 NKAIN3Q8N8D7 197 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 PNLDC1Q8NA58 520 aaKnown RBP12.32□□□□□ -0.44
PNKP-221ENST00000627317 CLDND2Q8NHS1 167 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 SLAMF9Q96A28 289 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 RAB39BQ96DA2 213 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 C1orf159Q96HA4 380 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 ZNF488Q96MN9 340 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 FAM192AQ9GZU8 254 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 EXOSC4Q9NPD3 245 aaKnown RBP12.32□□□□□ -0.44
PNKP-221ENST00000627317 PCDHB10Q9UN67 800 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 STUB1Q9UNE7 303 aa12.32□□□□□ -0.44
PNKP-221ENST00000627317 TRDV1A0A1B0GX56 115 aa12.31□□□□□ -0.44
PNKP-221ENST00000627317 KIAA1324LA8MWY0 1029 aaPredicted RBP12.31□□□□□ -0.44
PNKP-221ENST00000627317 TRAPPC2LH3BP13 241 aa12.31□□□□□ -0.44
PNKP-221ENST00000627317 SPRY1O43609 319 aaPredicted RBP12.31□□□□□ -0.44
PNKP-221ENST00000627317 FSTL3O95633 263 aa12.31□□□□□ -0.44
PNKP-221ENST00000627317 TMEM225BP0DP42 221 aa12.31□□□□□ -0.44
PNKP-221ENST00000627317 MUC1P15941 1255 aaPredicted RBP12.31□□□□□ -0.44
PNKP-221ENST00000627317 CD36P16671 472 aa12.31□□□□□ -0.44
PNKP-221ENST00000627317 CALRP27797 417 aaKnown RBP12.31□□□□□ -0.44
PNKP-221ENST00000627317 ZNF93P35789 620 aaPredicted RBP12.31□□□□□ -0.44
PNKP-221ENST00000627317 GZMKP49863 264 aa12.31□□□□□ -0.44
PNKP-221ENST00000627317 ZNF404Q494X3 552 aa12.31□□□□□ -0.44
PNKP-221ENST00000627317 CD200R1LQ6Q8B3 271 aa12.31□□□□□ -0.44
PNKP-221ENST00000627317 Q8IYB0 196 aa12.31□□□□□ -0.44
PNKP-221ENST00000627317 BATF2Q8N1L9 274 aa12.31□□□□□ -0.44
PNKP-221ENST00000627317 JAGN1Q8N5M9 183 aa12.31□□□□□ -0.44
PNKP-221ENST00000627317 TNFAIP8L1Q8WVP5 186 aa12.31□□□□□ -0.44
PNKP-221ENST00000627317 TMIGD2Q96BF3 282 aa12.31□□□□□ -0.44
PNKP-221ENST00000627317 CEP19Q96LK0 163 aa12.31□□□□□ -0.44
PNKP-221ENST00000627317 NRIP2Q9BQI9 281 aa12.31□□□□□ -0.44
PNKP-221ENST00000627317 TMEM246Q9BRR3 403 aa12.31□□□□□ -0.44
PNKP-221ENST00000627317 WDR13Q9H1Z4 485 aa12.31□□□□□ -0.44
PNKP-221ENST00000627317 TMEM165Q9HC07 324 aa12.31□□□□□ -0.44
PNKP-221ENST00000627317 SSR3Q9UNL2 185 aa12.31□□□□□ -0.44
PNKP-221ENST00000627317 COL6A5A8TX70 2615 aa12.3□□□□□ -0.44
PNKP-221ENST00000627317 MEGF11A6BM72 1044 aa12.3□□□□□ -0.44
PNKP-221ENST00000627317 CEACAM18A8MTB9 384 aa12.3□□□□□ -0.44
PNKP-221ENST00000627317 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.3□□□□□ -0.44
PNKP-221ENST00000627317 ANGPTL7O43827 346 aa12.3□□□□□ -0.44
PNKP-221ENST00000627317 NOS1APO75052 506 aaPredicted RBP12.3□□□□□ -0.44
PNKP-221ENST00000627317 IGHV2-5P01817 119 aa12.3□□□□□ -0.44
PNKP-221ENST00000627317 GYPAP02724 150 aa12.3□□□□□ -0.44
PNKP-221ENST00000627317 RPS2P15880 293 aaKnown RBP12.3□□□□□ -0.44
PNKP-221ENST00000627317 SRMP19623 302 aa12.3□□□□□ -0.44
PNKP-221ENST00000627317 GALP22466 123 aa12.3□□□□□ -0.44
PNKP-221ENST00000627317 MYL9P24844 172 aa12.3□□□□□ -0.44
PNKP-221ENST00000627317 TEX36Q5VZQ5 186 aa12.3□□□□□ -0.44
PNKP-221ENST00000627317 DCDC5Q6ZRR9 648 aa12.3□□□□□ -0.44
PNKP-221ENST00000627317 RNF144BQ7Z419 303 aa12.3□□□□□ -0.44
PNKP-221ENST00000627317 FAM90A1Q86YD7 464 aa12.3□□□□□ -0.44
PNKP-221ENST00000627317 SAXO1Q8IYX7 474 aa12.3□□□□□ -0.44
PNKP-221ENST00000627317 ZSCAN4Q8NAM6 433 aaPredicted RBP12.3□□□□□ -0.44
PNKP-221ENST00000627317 OR51F2Q8NH61 342 aa12.3□□□□□ -0.44
PNKP-221ENST00000627317 SEH1LQ96EE3 360 aa12.3□□□□□ -0.44
PNKP-221ENST00000627317 NKX3-1Q99801 234 aaPredicted RBP12.3□□□□□ -0.44
PNKP-221ENST00000627317 PPIL3Q9H2H8 161 aaKnown RBP12.3□□□□□ -0.44
PNKP-221ENST00000627317 ZNF665Q9H7R5 613 aa12.3□□□□□ -0.44
PNKP-221ENST00000627317 ELL3Q9HB65 397 aaPredicted RBP12.3□□□□□ -0.44
PNKP-221ENST00000627317 SMURF1Q9HCE7 757 aa12.3□□□□□ -0.44
PNKP-221ENST00000627317 SNTG1Q9NSN8 517 aa12.3□□□□□ -0.44
PNKP-221ENST00000627317 RASL12Q9NYN1 266 aa12.3□□□□□ -0.44
PNKP-221ENST00000627317 NLKQ9UBE8 527 aa12.3□□□□□ -0.44
PNKP-221ENST00000627317 YLPM1P49750 1951 aaKnown RBP12.3□□□□□ -0.44
PNKP-221ENST00000627317 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.29□□□□□ -0.441e-6■■■■■ 27.9
PNKP-221ENST00000627317 LOC100506127A0A0U1RQW1 187 aa12.29□□□□□ -0.44
PNKP-221ENST00000627317 NKX6-3A6NJ46 265 aa12.29□□□□□ -0.44
PNKP-221ENST00000627317 ACAA1P09110 424 aaPredicted RBP12.29□□□□□ -0.44
PNKP-221ENST00000627317 BCL3P20749 454 aa12.29□□□□□ -0.44
PNKP-221ENST00000627317 GADD45AP24522 165 aa12.29□□□□□ -0.44
PNKP-221ENST00000627317 OR3A4PP47883 348 aa12.29□□□□□ -0.44
PNKP-221ENST00000627317 ZP1P60852 638 aa12.29□□□□□ -0.44
PNKP-221ENST00000627317 TIMM50Q3ZCQ8 353 aa12.29□□□□□ -0.44
PNKP-221ENST00000627317 C22orf42Q6IC83 251 aa12.29□□□□□ -0.44
PNKP-221ENST00000627317 CRIP3Q6Q6R5 217 aa12.29□□□□□ -0.44
PNKP-221ENST00000627317 FIP1L1Q6UN15 594 aaKnown RBP12.29□□□□□ -0.44
PNKP-221ENST00000627317 ACP7Q6ZNF0 438 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms