RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 ARL2P36404 184 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 MAGEA6P43360 314 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 RPL10AP62906 217 aaKnown RBP0.53□□□□□ -2.32
SCN1A-208ENST00000625916 PSG4Q00888 419 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 GABRA6Q16445 453 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 BCL2A1Q16548 175 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 TTMPQ5BVD1 217 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 SPANXN2Q5MJ10 180 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 CLEC18BQ6UXF7 455 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 CYHR1Q6ZMK1 362 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 EIF3MQ7L2H7 374 aaKnown RBP0.53□□□□□ -2.32
SCN1A-208ENST00000625916 OTUD6AQ7L8S5 288 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 HS3ST5Q8IZT8 346 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 ZFP82Q8N141 532 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 DEFB119Q8N690 84 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 ZNF555Q8NEP9 628 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 OR2V1Q8NHB1 315 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 GPR119Q8TDV5 335 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 UBE2WQ96B02 151 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 UBE2E2Q96LR5 201 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 C9orf72Q96LT7 481 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 OR2A7Q96R45 310 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 PANX1Q96RD7 426 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 MTG1Q9BT17 334 aaPredicted RBP0.53□□□□□ -2.32
SCN1A-208ENST00000625916 ZC4H2Q9NQZ6 224 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 PXMP2Q9NR77 195 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 ADA2Q9NZK5 511 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 GCNT4Q9P109 453 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 MYEF2Q9P2K5 600 aaKnown RBP0.53□□□□□ -2.32
SCN1A-208ENST00000625916 VAX2Q9UIW0 290 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 OR51B2Q9Y5P1 312 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 PLEKHG2Q9H7P9 1386 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 DYSFO75923 2080 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 A0A1W2PRD5 423 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 F5H5P2 479 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 TEX46H3BTG2 121 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 J3QT63 122 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 K7EPK0 472 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 ANGP03950 147 aaKnown RBP0.52□□□□□ -2.33
SCN1A-208ENST00000625916 OPN1SWP03999 348 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 CATP04040 527 aaKnown RBP0.52□□□□□ -2.33
SCN1A-208ENST00000625916 UBCP0CG48 685 aaKnown RBP0.52□□□□□ -2.33
SCN1A-208ENST00000625916 GPR1P46091 355 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 YWHAEP62258 255 aaKnown RBP0.52□□□□□ -2.33
SCN1A-208ENST00000625916 RPL18AQ02543 176 aaKnown RBP0.52□□□□□ -2.33
SCN1A-208ENST00000625916 PMVKQ15126 192 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 C5orf64Q2M2E5 130 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 RPEL1Q2QD12 228 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 LINC00303Q3SY05 128 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 TMEM176BQ3YBM2 270 aaPredicted RBP0.52□□□□□ -2.33
SCN1A-208ENST00000625916 BEX5Q5H9J7 111 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 TMEM220Q6QAJ8 160 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 ZNF767PQ75MW2 155 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 APRG1Q8IVJ8 170 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 DAW1Q8N136 415 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 KIF2BQ8N4N8 673 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 LMX1AQ8TE12 382 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 C2orf15Q8WU43 125 aaKnown RBP0.52□□□□□ -2.33
SCN1A-208ENST00000625916 SMIM8Q96KF7 97 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 CCDC77Q9BR77 488 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 PRO0628Q9UI54 55 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 TMCC3Q9ULS5 477 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 KLF13Q9Y2Y9 288 aaPredicted RBP0.52□□□□□ -2.33
SCN1A-208ENST00000625916 OR51B4Q9Y5P0 310 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 FADS3Q9Y5Q0 445 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 U3KQK5 164 aa0.52□□□□□ -2.33
SCN1A-208ENST00000625916 IGKV1D-37A0A075B6S9 117 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 IGHV3-43A0A0B4J1X8 118 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 IGKV1D-43A0A0B4J1Z2 117 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 A0A0J9YYE9 177 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 A6NED7 52 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 ERICH4A6NGS2 130 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 HACD1B0YJ81 288 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 TP53I11O14683 189 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 RAB36O95755 333 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 PTTG1O95997 202 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 TRBC1P01850 177 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 HLA-AP01891 365 aaKnown RBP0.51□□□□□ -2.33
SCN1A-208ENST00000625916 TACSTD2P09758 323 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 GSTM3P21266 225 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 BRCA1P38398 1863 aaKnown RBP0.51□□□□□ -2.33
SCN1A-208ENST00000625916 LAMB2P55268 1798 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 TAS2R39P59534 338 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 RAD51Q06609 339 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 FOXF1Q12946 379 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 PYCR3Q53H96 274 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 ACSBG2Q5FVE4 666 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 NOXRED1Q6NXP6 359 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 TMEM53Q6P2H8 277 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 TCF23Q7RTU1 214 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 PRNTQ86SH4 94 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 CYP4Z2PQ8N1L4 340 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 OR5C1Q8NGR4 320 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 CA5BP1Q8WTZ4 195 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 PYURFQ96I23 114 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 OPALINQ96PE5 141 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 TSGA10Q9BZW7 698 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 DEFB129Q9H1M3 183 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 CD209Q9NNX6 404 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 HPCAL4Q9UM19 191 aa0.51□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms