RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 NKX2-2O95096 273 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 CDC34P49427 236 aaPredicted RBP7.96□□□□□ -1.13
VCL-206ENST00000623461 PNLIPRP2P54317 469 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 FUT7Q11130 342 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 EIF4E3Q8N5X7 224 aaKnown RBP7.96□□□□□ -1.13
VCL-206ENST00000623461 C12orf76Q8N812 135 aaPredicted RBP7.96□□□□□ -1.13
VCL-206ENST00000623461 OR11G2Q8NGC1 345 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 OR10G4Q8NGN3 311 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 OR10G9Q8NGN4 311 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 OR10G7Q8NGN6 311 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 DTD1Q8TEA8 209 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 FGF14Q92915 247 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 TMEM147Q9BVK8 224 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 KIAA1456Q9P272 454 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 TLCD2A6NGC4 264 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 K7ESM1 405 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 M0R2Z0 102 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 PDE6DO43924 150 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 TIMM8AO60220 97 aaPredicted RBP7.96□□□□□ -1.13
VCL-206ENST00000623461 ADH4P08319 380 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 HMGA1P17096 107 aaKnown RBP7.96□□□□□ -1.13
VCL-206ENST00000623461 HLA-GP17693 338 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 ASCL1P50553 236 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 ESPL1Q14674 2120 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 RTL8BQ17RB0 113 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 ISXQ2M1V0 245 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 LEMD1Q68G75 181 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 ARL6IP6Q8N6S5 226 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 OR1P1Q8NH06 330 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 BAHD1Q8TBE0 780 aaPredicted RBP7.96□□□□□ -1.13
VCL-206ENST00000623461 FAM234AQ9H0X4 552 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 ZNF391Q9UJN7 358 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 PPIL1Q9Y3C6 166 aa7.96□□□□□ -1.13
VCL-206ENST00000623461 FAM221AA4D161 298 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 H3BP45 60 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 ST8SIA5O15466 376 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 FCARP24071 287 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 IL3RAP26951 378 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 GPR12P47775 334 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 TRIM61Q5EBN2 209 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 VWA1Q6PCB0 445 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 LIAT1Q6ZQX7 453 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 C16orf52Q8NHV5 167 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 MUCL1Q96DR8 90 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 FBXO17Q96EF6 278 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 TMEM30AQ9NV96 361 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 CARHSP1Q9Y2V2 147 aaKnown RBP7.96□□□□□ -1.14
VCL-206ENST00000623461 PTRH2Q9Y3E5 179 aaKnown RBP7.96□□□□□ -1.14
VCL-206ENST00000623461 SHANK3Q9BYB0 1731 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 DICER1Q9UPY3 1922 aaKnown RBP7.96□□□□□ -1.14
VCL-206ENST00000623461 ZNF729A6NN14 1252 aaPredicted RBP7.96□□□□□ -1.14
VCL-206ENST00000623461 TBC1D28Q2M2D7 210 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 NOXO1Q8NFA2 376 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 OR2A1Q8NGT9 310 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 CLDN23Q96B33 292 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 MRGPRX4Q96LA9 322 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 IL23AQ9NPF7 189 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 MRM2Q9UI43 246 aaKnown RBP7.96□□□□□ -1.14
VCL-206ENST00000623461 LINC01553A4QN01 128 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 IDSB3KWA1 339 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 H0YIG0 161 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 ANKRD34CP0C6C1 535 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 PGFP49763 221 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 KISS1Q15726 138 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 OR4B1Q8NGF8 309 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 ZG16BQ96DA0 208 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 ST6GALNAC2Q9UJ37 374 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 SLC45A2Q9UMX9 530 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 ZFC3H1O60293 1989 aaKnown RBP7.96□□□□□ -1.14
VCL-206ENST00000623461 PCM1Q15154 2024 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 ICOSLGO75144 302 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 OR3A1P47881 315 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 C11orf42Q8N5U0 333 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 GVQW1Q8N7I0 195 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 WFIKKN1Q96NZ8 548 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 IL21Q9HBE4 155 aa7.96□□□□□ -1.14
VCL-206ENST00000623461 WISP3O95389 354 aaPredicted RBP7.95□□□□□ -1.14
VCL-206ENST00000623461 HSPB1P04792 205 aaKnown RBP7.95□□□□□ -1.14
VCL-206ENST00000623461 CD1CP29017 333 aa7.95□□□□□ -1.14
VCL-206ENST00000623461 LIMK1P53667 647 aa7.95□□□□□ -1.14
VCL-206ENST00000623461 C11orf40Q8WZ69 217 aa7.95□□□□□ -1.14
VCL-206ENST00000623461 HIST1H2BAQ96A08 127 aa7.95□□□□□ -1.14
VCL-206ENST00000623461 TLNRD1Q9H1K6 362 aa7.95□□□□□ -1.14
VCL-206ENST00000623461 RALGAPA2Q2PPJ7 1873 aa7.95□□□□□ -1.14
VCL-206ENST00000623461 CDC42EP2O14613 210 aa7.95□□□□□ -1.14
VCL-206ENST00000623461 ZNF253O75346 499 aa7.95□□□□□ -1.14
VCL-206ENST00000623461 OR2A4O95047 310 aa7.95□□□□□ -1.14
VCL-206ENST00000623461 ERHP84090 104 aaKnown RBP7.95□□□□□ -1.14
VCL-206ENST00000623461 NHLH1Q02575 133 aa7.95□□□□□ -1.14
VCL-206ENST00000623461 ARL16Q0P5N6 197 aa7.95□□□□□ -1.14
VCL-206ENST00000623461 ZNF770Q6IQ21 691 aaPredicted RBP7.95□□□□□ -1.14
VCL-206ENST00000623461 THSD4Q6ZMP0 1018 aa7.95□□□□□ -1.14
VCL-206ENST00000623461 CPEB3Q8NE35 698 aaKnown RBP7.95□□□□□ -1.14
VCL-206ENST00000623461 OR2A7Q96R45 310 aa7.95□□□□□ -1.14
VCL-206ENST00000623461 WDR61Q9GZS3 305 aaKnown RBP7.95□□□□□ -1.14
VCL-206ENST00000623461 PAM16Q9Y3D7 125 aa7.95□□□□□ -1.14
VCL-206ENST00000623461 TRBV23-1A0A0A0MS06 115 aa7.95□□□□□ -1.14
VCL-206ENST00000623461 PITX3O75364 302 aa7.95□□□□□ -1.14
VCL-206ENST00000623461 PGA4P0DJD7 388 aa7.95□□□□□ -1.14
VCL-206ENST00000623461 PGA5P0DJD9 388 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms