RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 PLXDC2Q6UX71 529 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 CA5BP1Q8WTZ4 195 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 MRPL24Q96A35 216 aaKnown RBP9.52□□□□□ -0.89
UPF3A-212ENST00000619079 ADAT3Q96EY9 351 aaPredicted RBP9.52□□□□□ -0.89
UPF3A-212ENST00000619079 ST6GALNAC5Q9BVH7 336 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 TRBV24-1A0A075B6N3 115 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 A0A1B0GV50 99 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 A6NIZ1 184 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 SDCBPO00560 298 aaPredicted RBP9.51□□□□□ -0.89
UPF3A-212ENST00000619079 RAP1BP61224 184 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 TCF15Q12870 199 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 PPA1Q15181 289 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 CD226Q15762 336 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 KIAA0895LQ68EN5 471 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 GALNTL5Q7Z4T8 443 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 SEMA6DQ8NFY4 1073 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 ARHGAP5-AS1Q96IT6 56 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 SNX22Q96L94 193 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 CCDC3Q9BQI4 270 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 MPDZO75970 2070 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 TRPM6Q9BX84 2022 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 KMT2EQ8IZD2 1858 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 BLACEA4D250 179 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 SERPINE3A8MV23 424 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 M0R143 59 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 ST8SIA3O43173 380 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 HSPA12AO43301 675 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 CA11O75493 328 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 RAD51DO75771 328 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 SCAF4O95104 1147 aaKnown RBP9.51□□□□□ -0.89
UPF3A-212ENST00000619079 HBE1P02100 147 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 OPN1MWP04001 364 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 GIMD1P0DJR0 217 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 OPN1MW2P0DN77 364 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 OPN1MW3P0DN78 364 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 KLK2P20151 261 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 CEBPGP53567 150 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 TMEM50BP56557 158 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 LYSMD4Q5XG99 296 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 LANCL3Q6ZV70 420 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 RTN4RL2Q86UN3 420 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 CYB561D1Q8N8Q1 229 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 CADM4Q8NFZ8 388 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 SLC26A10Q8NG04 563 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 C16orf52Q8NHV5 167 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 RNF133Q8WVZ7 376 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 FAM131CQ96AQ9 280 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 POM121Q96HA1 1249 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 OR10A2Q9H208 303 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 AK3Q9UIJ7 227 aa9.51□□□□□ -0.89
UPF3A-212ENST00000619079 COA3Q9Y2R0 106 aaPredicted RBP9.51□□□□□ -0.89
UPF3A-212ENST00000619079 CACNA1HO95180 2353 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 DNAH14Q0VDD8 3507 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 METTL12A8MUP2 240 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 EREGO14944 169 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 RRP8O43159 456 aaKnown RBP9.5□□□□□ -0.89
UPF3A-212ENST00000619079 TTRP02766 147 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 METTL15P1P0C7V9 234 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 GPR3P46089 330 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 FZD2Q14332 565 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 TAF9Q16594 264 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 PMS2CLQ68D20 193 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 CBLN3Q6UW01 205 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 SLC16A14Q7RTX9 510 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 MRPL52Q86TS9 123 aaKnown RBP9.5□□□□□ -0.89
UPF3A-212ENST00000619079 GPR137CQ8N3F9 429 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 OR2G3Q8NGZ4 309 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 OR14L1PQ8NHC6 308 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 BSCL2Q96G97 398 aaPredicted RBP9.5□□□□□ -0.89
UPF3A-212ENST00000619079 DGAT2Q96PD7 388 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 OR2M4Q96R27 311 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 ZNF700Q9H0M5 742 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 HIPK2Q9H2X6 1198 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 MOB1AQ9H8S9 216 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 FAM206AQ9NX38 181 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 V9GYS6 101 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 GON4LQ3T8J9 2241 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 FRYLO94915 3013 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 HRKO00198 91 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 CRTAPO75718 401 aaPredicted RBP9.5□□□□□ -0.89
UPF3A-212ENST00000619079 DXOO77932 396 aaKnown RBP9.5□□□□□ -0.89
UPF3A-212ENST00000619079 DUSP1P28562 367 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 SFTPDP35247 375 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 GAGE1Q13065 139 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 GNMTQ14749 295 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 ICAM4Q14773 271 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 ANKRD39Q53RE8 183 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 COA6Q5JTJ3 125 aaKnown RBP9.5□□□□□ -0.89
UPF3A-212ENST00000619079 SPSB3Q6PJ21 355 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 C5orf24Q7Z6I8 188 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 LRTM2Q8N967 370 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 ADGRG7Q96K78 797 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 C1orf147Q96MC9 270 aaPredicted RBP9.5□□□□□ -0.89
UPF3A-212ENST00000619079 OR10A5Q9H207 317 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 CDH20Q9HBT6 801 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 DECR2Q9NUI1 292 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 TBC1D29Q9UFV1 150 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 PADI1Q9ULC6 663 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 LIPGQ9Y5X9 500 aa9.5□□□□□ -0.89
UPF3A-212ENST00000619079 ZNF878C9JN71 531 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms