RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 C9orf62Q8N4C0 152 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 OR5C1Q8NGR4 320 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 OR10X1Q8NGY0 326 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 NXF2Q9GZY0 626 aaKnown RBP12.44□□□□□ -0.42
CPSF1-212ENST00000616140 WDR13Q9H1Z4 485 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 DTX4Q9Y2E6 619 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 ESPL1Q14674 2120 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 UBE2L5PA0A1B0GUS4 154 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 M0R1B8 84 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 RGS13O14921 159 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 CYTIPO60759 359 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 SLC25A6P12236 298 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 S100A7P31151 101 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 EDEM2Q9BV94 578 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 MRPS18AQ9NVS2 196 aaKnown RBP12.44□□□□□ -0.42
CPSF1-212ENST00000616140 TRGV5A0A0B4J1U4 118 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 SOCS1O15524 211 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 DTYMKP23919 212 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 RPS4XP62701 263 aaKnown RBP12.43□□□□□ -0.42
CPSF1-212ENST00000616140 ISXQ2M1V0 245 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 ZNF528Q3MIS6 628 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 RPL7L1Q6DKI1 246 aaKnown RBP12.43□□□□□ -0.42
CPSF1-212ENST00000616140 JMJD6Q6NYC1 403 aaPredicted RBP12.43□□□□□ -0.42
CPSF1-212ENST00000616140 BTNL8Q6UX41 500 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 ADGRG3Q86Y34 549 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 WFDC8Q8IUA0 241 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 RASL10BQ96S79 203 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 ATP23Q9Y6H3 246 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 A0A1W2PR80 420 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 TCRBV16S1A1N1A0A5B0 115 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 OR5AC1P0C628 307 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 PGA3P0DJD8 388 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 CA6P23280 308 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 PEBP1P30086 187 aaKnown RBP12.43□□□□□ -0.42
CPSF1-212ENST00000616140 GALNSP34059 522 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 TAS2R45P59539 299 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 OR5M9Q8NGP3 310 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 NUBPLQ8TB37 319 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 CLDN23Q96B33 292 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 CTDSP1Q9GZU7 261 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 MMP26Q9NRE1 261 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 CYB5R1Q9UHQ9 305 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 PCOLCE2Q9UKZ9 415 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 ADAM20O43506 726 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 INHBBP09529 407 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 CCL2P13500 99 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 FABP9Q0Z7S8 132 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 SKP2Q13309 424 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 RNF212Q495C1 297 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 CARFQ8N187 725 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 OR6X1Q8NH79 312 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 ASB5Q8WWX0 329 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 PIK3IP1Q96FE7 263 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 ZPBPQ9BS86 351 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 PRR13Q9NZ81 148 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 FAM24AA6NFZ4 105 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 LINC01387J3KSC0 135 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 EPHA8P29322 1005 aaPredicted RBP12.43□□□□□ -0.42
CPSF1-212ENST00000616140 RTL8BQ17RB0 113 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 DEFB109BQ30KR1 87 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 DHRS13Q6UX07 377 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 OR2C3Q8N628 320 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 COMMD1Q8N668 190 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 KISS1RQ969F8 398 aaPredicted RBP12.43□□□□□ -0.42
CPSF1-212ENST00000616140 PHYHIPLQ96FC7 376 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 SCMH1Q96GD3 660 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 BOD1Q96IK1 185 aa12.43□□□□□ -0.42
CPSF1-212ENST00000616140 MARF1Q9Y4F3 1742 aaKnown RBP12.42□□□□□ -0.42
CPSF1-212ENST00000616140 G3V3Q6 166 aa12.42□□□□□ -0.42
CPSF1-212ENST00000616140 NGFP01138 241 aa12.42□□□□□ -0.42
CPSF1-212ENST00000616140 TMIGD3P0DMS9 266 aaPredicted RBP12.42□□□□□ -0.42
CPSF1-212ENST00000616140 FGF7P21781 194 aa12.42□□□□□ -0.42
CPSF1-212ENST00000616140 LGALSLQ3ZCW2 172 aaPredicted RBP12.42□□□□□ -0.42
CPSF1-212ENST00000616140 PLAC9Q5JTB6 97 aa12.42□□□□□ -0.42
CPSF1-212ENST00000616140 DBX2Q6ZNG2 339 aa12.42□□□□□ -0.42
CPSF1-212ENST00000616140 SAT2Q96F10 170 aaPredicted RBP12.42□□□□□ -0.42
CPSF1-212ENST00000616140 STRCP1A6NGW2 1772 aa12.42□□□□□ -0.42
CPSF1-212ENST00000616140 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.42□□□□□ -0.42
CPSF1-212ENST00000616140 IGKV1-8A0A0C4DH67 115 aa12.42□□□□□ -0.42
CPSF1-212ENST00000616140 ACAA2P42765 397 aaKnown RBP12.42□□□□□ -0.42
CPSF1-212ENST00000616140 OR5B3Q8NH48 314 aa12.42□□□□□ -0.42
CPSF1-212ENST00000616140 NAA60Q9H7X0 242 aa12.42□□□□□ -0.42
CPSF1-212ENST00000616140 UBR3Q6ZT12 1888 aa12.42□□□□□ -0.42
CPSF1-212ENST00000616140 K7EQM0 130 aa12.42□□□□□ -0.42
CPSF1-212ENST00000616140 HEXAP06865 529 aa12.42□□□□□ -0.42
CPSF1-212ENST00000616140 TMEM33P57088 247 aa12.42□□□□□ -0.42
CPSF1-212ENST00000616140 ERHP84090 104 aaKnown RBP12.42□□□□□ -0.42
CPSF1-212ENST00000616140 ZXDAP98168 799 aa12.42□□□□□ -0.42
CPSF1-212ENST00000616140 MRPS24Q96EL2 167 aaKnown RBP12.42□□□□□ -0.42
CPSF1-212ENST00000616140 CXorf58Q96LI9 332 aa12.42□□□□□ -0.42
CPSF1-212ENST00000616140 TAAR9Q96RI9 348 aa12.42□□□□□ -0.42
CPSF1-212ENST00000616140 GAR1Q9NY12 217 aaKnown RBP12.42□□□□□ -0.42
CPSF1-212ENST00000616140 A0A1W2PPH5 198 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 TMEM30CPA0ZSE6 113 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 LIPT2A6NK58 231 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 GPR37O15354 613 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 CRHP06850 196 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 KLF9Q13886 244 aaPredicted RBP12.41□□□□□ -0.42
CPSF1-212ENST00000616140 TSPO2Q5TGU0 170 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 ZNF429Q86V71 674 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms