RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 PLP2Q04941 152 aa10.12□□□□□ -0.79
VRK3-223ENST00000601341 RSPO1Q2MKA7 263 aaPredicted RBP10.12□□□□□ -0.79
VRK3-223ENST00000601341 VAX1Q5SQQ9 334 aa10.12□□□□□ -0.79
VRK3-223ENST00000601341 DRAM2Q6UX65 266 aa10.12□□□□□ -0.79
VRK3-223ENST00000601341 TRAPPC6BQ86SZ2 158 aa10.12□□□□□ -0.79
VRK3-223ENST00000601341 NAA40Q86UY6 237 aa10.12□□□□□ -0.79
VRK3-223ENST00000601341 ANGPTL5Q86XS5 388 aa10.12□□□□□ -0.79
VRK3-223ENST00000601341 ARRDC1Q8N5I2 433 aa10.12□□□□□ -0.79
VRK3-223ENST00000601341 ACBD4Q8NC06 268 aa10.12□□□□□ -0.79
VRK3-223ENST00000601341 RND1Q92730 232 aa10.12□□□□□ -0.79
VRK3-223ENST00000601341 RBPMSQ93062 196 aaKnown RBP10.12□□□□□ -0.79
VRK3-223ENST00000601341 ZNF799Q96GE5 643 aa10.12□□□□□ -0.79
VRK3-223ENST00000601341 CHST6Q9GZX3 395 aa10.12□□□□□ -0.79
VRK3-223ENST00000601341 MFFQ9GZY8 342 aa10.12□□□□□ -0.79
VRK3-223ENST00000601341 IFT46Q9NQC8 304 aa10.12□□□□□ -0.79
VRK3-223ENST00000601341 Q9UFV3 132 aa10.12□□□□□ -0.79
VRK3-223ENST00000601341 SESN1Q9Y6P5 492 aa10.12□□□□□ -0.79
VRK3-223ENST00000601341 NCOA6Q14686 2063 aaPredicted RBP10.12□□□□□ -0.79
VRK3-223ENST00000601341 ZGRF1Q86YA3 2104 aa10.12□□□□□ -0.79
VRK3-223ENST00000601341 FXYD6-FXYD2A0A087WZ82 144 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 DHRS7CA6NNS2 312 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 M0QYG6 137 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 LMX1BO60663 402 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 CA11O75493 328 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 NMBP08949 121 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 COX5BP10606 129 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 PRF1P14222 555 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 BMP5P22003 454 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 CD34P28906 385 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 RPS27AP62979 156 aaKnown RBP10.11□□□□□ -0.79
VRK3-223ENST00000601341 UBA52P62987 128 aaKnown RBP10.11□□□□□ -0.79
VRK3-223ENST00000601341 PPA1Q15181 289 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 C2orf68Q2NKX9 166 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 KRTAP27-1Q3LI81 207 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 SFRP5Q5T4F7 317 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 DCAF12L2Q5VW00 463 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 AWAT2Q6E213 333 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 RGS7BPQ6MZT1 257 aaPredicted RBP10.11□□□□□ -0.79
VRK3-223ENST00000601341 CXorf67Q86X51 503 aaPredicted RBP10.11□□□□□ -0.79
VRK3-223ENST00000601341 OR5AS1Q8N127 324 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 C17orf78Q8N4C9 275 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 FAM89BQ8N5H3 189 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 OR8B12Q8NGG6 310 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 OR56B1Q8NGI3 324 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 OR51E1Q8TCB6 317 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 PP6455Q8WZ26 134 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 PHYHIPLQ96FC7 376 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 SCGB3A2Q96PL1 93 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 DMRTA2Q96SC8 542 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 PHB2Q99623 299 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 OCSTAMPQ9BR26 566 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 URM1Q9BTM9 101 aaKnown RBP10.11□□□□□ -0.79
VRK3-223ENST00000601341 FXYD6Q9H0Q3 95 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 DNTTIP1Q9H147 329 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 LPAR5Q9H1C0 372 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 SLC25A32Q9H2D1 315 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 MEMO1Q9Y316 297 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 A0A0B4J2A0 478 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 ZNF503-AS2A6NEH8 195 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 MFSD2BA6NFX1 497 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 WIPF3A6NGB9 483 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 OR5H14A6NHG9 310 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 A8MXE2 369 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 KRBOX1C9JBD0 128 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 DUS4LO95620 317 aaKnown RBP10.11□□□□□ -0.79
VRK3-223ENST00000601341 HLA-AP01891 365 aaKnown RBP10.11□□□□□ -0.79
VRK3-223ENST00000601341 FCER2P06734 321 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 DBHP09172 617 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 SLC2A1P11166 492 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 ZP3P21754 424 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 OR10K2Q6IF99 312 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 ZNF474Q6S9Z5 364 aaPredicted RBP10.11□□□□□ -0.79
VRK3-223ENST00000601341 FAM57BQ71RH2 274 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 MRGPRGQ86SM5 289 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 KCNRGQ8N5I3 272 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 PNLDC1Q8NA58 520 aaKnown RBP10.11□□□□□ -0.79
VRK3-223ENST00000601341 CPEB3Q8NE35 698 aaKnown RBP10.11□□□□□ -0.79
VRK3-223ENST00000601341 STEAP2Q8NFT2 490 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 OR52H1Q8NGJ2 320 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 OR13C9Q8NGT0 318 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 LRRC20Q8TCA0 184 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 PGAM5Q96HS1 289 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 C1orf147Q96MC9 270 aaPredicted RBP10.11□□□□□ -0.79
VRK3-223ENST00000601341 CST11Q9H112 138 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 RDH8Q9NYR8 311 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 COMMD9Q9P000 198 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 SHPKQ9UHJ6 478 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 OSGIN2Q9Y236 505 aa10.11□□□□□ -0.79
VRK3-223ENST00000601341 MRPS28Q9Y2Q9 187 aaKnown RBP10.11□□□□□ -0.79
VRK3-223ENST00000601341 NBEAQ8NFP9 2946 aa10.1□□□□□ -0.79
VRK3-223ENST00000601341 POLEQ07864 2286 aa10.1□□□□□ -0.79
VRK3-223ENST00000601341 USP24Q9UPU5 2620 aa10.1□□□□□ -0.79
VRK3-223ENST00000601341 ARHGAP21Q5T5U3 1957 aa10.1□□□□□ -0.79
VRK3-223ENST00000601341 EEF1E1-BLOC1S5C9J1V9 151 aa10.1□□□□□ -0.79
VRK3-223ENST00000601341 IFNA6P05013 189 aa10.1□□□□□ -0.79
VRK3-223ENST00000601341 HIST1H1DP16402 221 aaKnown RBP10.1□□□□□ -0.79
VRK3-223ENST00000601341 THBS4P35443 961 aa10.1□□□□□ -0.79
VRK3-223ENST00000601341 CYCSP99999 105 aaKnown RBP10.1□□□□□ -0.79
VRK3-223ENST00000601341 SCGB2B2Q4G0G5 96 aa10.1□□□□□ -0.79
VRK3-223ENST00000601341 BHLHA15Q7RTS1 189 aaPredicted RBP10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms