RNA–Protein interactions for RNA: ENST00000599223.5

IRF3-223, Transcript of interferon regulatory factor 3, human

TSL 1 (best) BASIC

Gene IRF3, Length 1,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-223	ENST00000599223	TMEM185A	Q8NFB2	350 aa		11.95	□□□□□ -0.5
IRF3-223	ENST00000599223	OR5R1	Q8NH85	324 aa		11.95	□□□□□ -0.5
IRF3-223	ENST00000599223	THEM6	Q8WUY1	208 aa		11.95	□□□□□ -0.5
IRF3-223	ENST00000599223	CCDC90B	Q9GZT6	254 aa		11.95	□□□□□ -0.5
IRF3-223	ENST00000599223	OR51I2	Q9H344	312 aa		11.95	□□□□□ -0.5
IRF3-223	ENST00000599223	FOXJ3	Q9UPW0	622 aa		11.95	□□□□□ -0.5
IRF3-223	ENST00000599223	NOTCH3	Q9UM47	2321 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	IRGM	A1A4Y4	181 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	ANKRD61	A6NGH8	418 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	PTGES3L	E9PB15	166 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223		G3V4G9	280 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	PSMD9	O00233	223 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	ANGPTL7	O43827	346 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	CSF1	P09603	554 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	SMIM18	P0DKX4	95 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	SLC2A5	P22732	501 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	GLRA1	P23415	457 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	GABRA2	P47869	451 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	EFNB2	P52799	333 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	HCCS	P53701	268 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	ACSM1	Q08AH1	577 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	APOF	Q13790	326 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	FAM185A	Q8N0U4	392 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	ZNF454	Q8N9F8	522 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	RFK	Q969G6	155 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	MED30	Q96HR3	178 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	SSX3	Q99909	188 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	FAM192A	Q9GZU8	254 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	ABCB9	Q9NP78	766 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	PLCXD1	Q9NUJ7	323 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	FAM206A	Q9NX38	181 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	H2AFY2	Q9P0M6	372 aa	Predicted RBP	11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	FBLN5	Q9UBX5	448 aa		11.94	□□□□□ -0.5
IRF3-223	ENST00000599223	EFCAB10	A6NFE3	127 aa		11.93	□□□□□ -0.5
IRF3-223	ENST00000599223	ZNF732	B4DXR9	585 aa		11.93	□□□□□ -0.5
IRF3-223	ENST00000599223	PRR23D1	E9PI22	279 aa	Predicted RBP	11.93	□□□□□ -0.5
IRF3-223	ENST00000599223	RGS10	O43665	173 aa		11.93	□□□□□ -0.5
IRF3-223	ENST00000599223	PRR23D2	P0DMB1	279 aa	Predicted RBP	11.93	□□□□□ -0.5
IRF3-223	ENST00000599223	ALOX5AP	P20292	161 aa		11.93	□□□□□ -0.5
IRF3-223	ENST00000599223	PAICS	P22234	425 aa	Known RBP	11.93	□□□□□ -0.5
IRF3-223	ENST00000599223	CEBPD	P49716	269 aa	Predicted RBP	11.93	□□□□□ -0.5
IRF3-223	ENST00000599223	BEAN1	Q3B7T3	259 aa		11.93	□□□□□ -0.5
IRF3-223	ENST00000599223	KRT74	Q7RTS7	529 aa		11.93	□□□□□ -0.5
IRF3-223	ENST00000599223	HIST2H2AB	Q8IUE6	130 aa	Predicted RBP	11.93	□□□□□ -0.5
IRF3-223	ENST00000599223	CPO	Q8IVL8	374 aa		11.93	□□□□□ -0.5
IRF3-223	ENST00000599223	MKX	Q8IYA7	352 aa		11.93	□□□□□ -0.5
IRF3-223	ENST00000599223	STX19	Q8N4C7	294 aa		11.93	□□□□□ -0.5
IRF3-223	ENST00000599223	TCEANC	Q8N8B7	351 aa		11.93	□□□□□ -0.5
IRF3-223	ENST00000599223	TMEM163	Q8TC26	289 aa		11.93	□□□□□ -0.5
IRF3-223	ENST00000599223	AQP3	Q92482	292 aa		11.93	□□□□□ -0.5
IRF3-223	ENST00000599223	ZNF488	Q96MN9	340 aa		11.93	□□□□□ -0.5
IRF3-223	ENST00000599223	IL4I1	Q96RQ9	567 aa		11.93	□□□□□ -0.5
IRF3-223	ENST00000599223	TTTY10	Q9BZA0	68 aa		11.93	□□□□□ -0.5
IRF3-223	ENST00000599223	NIPAL2	Q9H841	368 aa		11.93	□□□□□ -0.5
IRF3-223	ENST00000599223	RPL36	Q9Y3U8	105 aa	Known RBP	11.93	□□□□□ -0.5
IRF3-223	ENST00000599223	TRBV23-1	A0A0A0MS06	115 aa		11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	SMIM31	A0A1B0GVY4	71 aa		11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	PRODH	O43272	600 aa		11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	XPNPEP2	O43895	674 aa		11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	WBP4	O75554	376 aa	Known RBP	11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	IGLV3-1	P01715	115 aa		11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	PRB2	P02812	416 aa	Predicted RBP	11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	FAH	P16930	419 aa		11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	BMX	P51813	675 aa		11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	ERVFRD-1	P60508	538 aa		11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	GNG3	P63215	75 aa		11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	MFGE8	Q08431	387 aa	Predicted RBP	11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	HERPUD1	Q15011	391 aa		11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	LRRC75B	Q2VPJ9	315 aa		11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	SLC25A30	Q5SVS4	291 aa		11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	HAGHL	Q6PII5	290 aa	Predicted RBP	11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	C11orf42	Q8N5U0	333 aa		11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	CD177	Q8N6Q3	437 aa		11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	KLHDC1	Q8N7A1	406 aa		11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	OR51G2	Q8NGK0	314 aa		11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	CFHR4	Q92496	578 aa		11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	SDSL	Q96GA7	329 aa		11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	CNOT2	Q9NZN8	540 aa	Known RBP	11.92	□□□□□ -0.5
IRF3-223	ENST00000599223	CCDC182	A6NF36	153 aa		11.91	□□□□□ -0.5
IRF3-223	ENST00000599223	SYNGR1	O43759	233 aa		11.91	□□□□□ -0.5
IRF3-223	ENST00000599223	MTRF1	O75570	445 aa	Known RBP	11.91	□□□□□ -0.5
IRF3-223	ENST00000599223	MRPL3	P09001	348 aa	Known RBP	11.91	□□□□□ -0.5
IRF3-223	ENST00000599223	CCL3L1	P16619	93 aa		11.91	□□□□□ -0.5
IRF3-223	ENST00000599223	COX7A1	P24310	79 aa		11.91	□□□□□ -0.5
IRF3-223	ENST00000599223	CEACAM21	Q3KPI0	293 aa		11.91	□□□□□ -0.5
IRF3-223	ENST00000599223	KPRP	Q5T749	579 aa	Predicted RBP	11.91	□□□□□ -0.5
IRF3-223	ENST00000599223	SAMD5	Q5TGI4	173 aa		11.91	□□□□□ -0.5
IRF3-223	ENST00000599223	AHSA2	Q719I0	299 aa		11.91	□□□□□ -0.5
IRF3-223	ENST00000599223	GPR141	Q7Z602	305 aa		11.91	□□□□□ -0.5
IRF3-223	ENST00000599223	GID4	Q8IVV7	300 aa		11.91	□□□□□ -0.5
IRF3-223	ENST00000599223	BATF2	Q8N1L9	274 aa		11.91	□□□□□ -0.5
IRF3-223	ENST00000599223	OR4C13	Q8NGP0	309 aa		11.91	□□□□□ -0.5
IRF3-223	ENST00000599223	PIFO	Q8TCI5	191 aa		11.91	□□□□□ -0.5
IRF3-223	ENST00000599223	APH1B	Q8WW43	257 aa		11.91	□□□□□ -0.5
IRF3-223	ENST00000599223	PPP1R14A	Q96A00	147 aa		11.91	□□□□□ -0.5
IRF3-223	ENST00000599223	DUSP21	Q9H596	190 aa		11.91	□□□□□ -0.5
IRF3-223	ENST00000599223	GPR84	Q9NQS5	396 aa		11.91	□□□□□ -0.5
IRF3-223	ENST00000599223	AKAP8L	Q9ULX6	646 aa	Known RBP eCLIP	11.91	□□□□□ -0.5	6e-8	■□□□□ 9.9
IRF3-223	ENST00000599223	COPS3	Q9UNS2	423 aa		11.91	□□□□□ -0.5
IRF3-223	ENST00000599223	SF3B6	Q9Y3B4	125 aa	Known RBP	11.91	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms