RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	SLC2A10	O95528	541 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	METTL15P1	P0C7V9	234 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	RBMY1C	P0DJD4	496 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	HIST1H1B	P16401	226 aa	Known RBP	3.87	□□□□□ -1.79
SS18-223	ENST00000583595	UGT2B7	P16662	529 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	IL1RN	P18510	177 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	PGAM1	P18669	254 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	RCC1	P18754	421 aa	Predicted RBP	3.87	□□□□□ -1.79
SS18-223	ENST00000583595	KDELR1	P24390	212 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	ADORA2B	P29275	332 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	SLC6A1	P30531	599 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	MPI	P34949	423 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	CDKN2C	P42773	168 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	RPL29	P47914	159 aa	Known RBP	3.87	□□□□□ -1.79
SS18-223	ENST00000583595	HNRNPA3	P51991	378 aa	Known RBP	3.87	□□□□□ -1.79
SS18-223	ENST00000583595	KRTAP10-7	P60409	375 aa	Predicted RBP	3.87	□□□□□ -1.79
SS18-223	ENST00000583595	EMX2	Q04743	252 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	SLC10A1	Q14973	349 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	CHRFAM7A	Q494W8	412 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	AKIRIN2	Q53H80	203 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	SPIN4	Q56A73	249 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	XKR4	Q5GH76	650 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	SPANXN3	Q5MJ09	141 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	SPESP1	Q6UW49	350 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	AHSA2	Q719I0	299 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	ZNF720	Q7Z2F6	126 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	SMIM15	Q7Z3B0	74 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	PRSS58	Q8IYP2	241 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	PUSL1	Q8N0Z8	303 aa	Known RBP	3.87	□□□□□ -1.79
SS18-223	ENST00000583595	ZFP82	Q8N141	532 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595		Q8N402	240 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	ACOT4	Q8N9L9	421 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595		Q8NBF4	154 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	TMEM104	Q8NE00	496 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	OR5T1	Q8NG75	326 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	OR9A2	Q8NGT5	310 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	C22orf15	Q8WYQ4	148 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	PSMG2	Q969U7	264 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	OTUB2	Q96DC9	234 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	L3HYPDH	Q96EM0	354 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	MED8	Q96G25	268 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	CCDC115	Q96NT0	180 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	RNF157	Q96PX1	679 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	MCHR1	Q99705	422 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	OCR1	Q9BZK8	76 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	RNF167	Q9H6Y7	350 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	CWH43	Q9H720	699 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	RETN	Q9HD89	108 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	ABCB9	Q9NP78	766 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	PRSS16	Q9NQE7	514 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	SIRT7	Q9NRC8	400 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	SPRR3	Q9UBC9	169 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	LSM7	Q9UK45	103 aa	Known RBP	3.87	□□□□□ -1.79
SS18-223	ENST00000583595	KPTN	Q9Y664	436 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	BAZ2A	Q9UIF9	1905 aa	Known RBP	3.87	□□□□□ -1.79
SS18-223	ENST00000583595	IGLV3-22	A0A075B6J6	115 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595		A0A1W2PQL4	384 aa	Predicted RBP	3.86	□□□□□ -1.79
SS18-223	ENST00000583595	TMEM72	A0PK05	275 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	COLCA2	A8K830	154 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	HMSD	A8MTL9	139 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	MCRIP1	C9JLW8	97 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	KDELR3	O43731	214 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	EIF4E2	O60573	245 aa	Known RBP	3.86	□□□□□ -1.79
SS18-223	ENST00000583595	SLC19A2	O60779	497 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	EED	O75530	441 aa	Known RBP	3.86	□□□□□ -1.79
SS18-223	ENST00000583595	GUSB	P08236	651 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	UBB	P0CG47	229 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	GABRA1	P14867	456 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	ZNF25	P17030	456 aa	Predicted RBP	3.86	□□□□□ -1.79
SS18-223	ENST00000583595	GGT1	P19440	569 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	PRPS1L1	P21108	318 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	NFYA	P23511	347 aa	Predicted RBP	3.86	□□□□□ -1.79
SS18-223	ENST00000583595	LMO2	P25791	158 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	S100A2	P29034	98 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	CRISP1	P54107	249 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	FBXW4	P57775	412 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	VSX2	P58304	361 aa	Predicted RBP	3.86	□□□□□ -1.79
SS18-223	ENST00000583595	RAP1A	P62834	184 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	UBA52	P62987	128 aa	Known RBP	3.86	□□□□□ -1.79
SS18-223	ENST00000583595	SIGLEC14	Q08ET2	396 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	GNMT	Q14749	295 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	OR8G1	Q15617	311 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	TRAM1	Q15629	374 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	MPPED2	Q15777	294 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	USF2	Q15853	346 aa	Predicted RBP	3.86	□□□□□ -1.79
SS18-223	ENST00000583595	ZNF630	Q2M218	657 aa	Predicted RBP	3.86	□□□□□ -1.79
SS18-223	ENST00000583595	NSUN5P1	Q3KNT7	163 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	PYCR3	Q53H96	274 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	UFSP1	Q6NVU6	142 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	SCIMP	Q6UWF3	145 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	CASP12	Q6UXS9	341 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	ACOT7L	Q6ZUV0	252 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	TMEM179	Q6ZVK1	233 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	MRPL52	Q86TS9	123 aa	Known RBP	3.86	□□□□□ -1.79
SS18-223	ENST00000583595	ANGPTL5	Q86XS5	388 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	CBLN2	Q8IUK8	224 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	C9orf40	Q8IXQ3	194 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	FAM58A	Q8N1B3	248 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	SLC22A18AS	Q8N1D0	253 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	OR56A4	Q8NGH8	313 aa		3.86	□□□□□ -1.79

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