RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 FAM74A1Q5RGS3 127 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.76□□□□□ -1.01
VPS53-220ENST00000576149 ZNF100Q8IYN0 542 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 ZSCAN4Q8NAM6 433 aaPredicted RBP8.76□□□□□ -1.01
VPS53-220ENST00000576149 BORCS8Q96FH0 119 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 HSF4Q9ULV5 492 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 RTTNQ86VV8 2226 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 FRYLO94915 3013 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 hCG_38984A0A1B0GV85 526 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 A0A1B0GW55 424 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 H0YIZ8 118 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 TERTO14746 1132 aaKnown RBP8.75□□□□□ -1.01
VPS53-220ENST00000576149 MSTNO14793 375 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 NEURL1O76050 574 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 NRASP01111 189 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 MMP7P09237 267 aaPredicted RBP8.75□□□□□ -1.01
VPS53-220ENST00000576149 DUX4L2P0CJ85 424 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 DUX4L3P0CJ86 424 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 DUX4L4P0CJ87 422 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 DUX4L5P0CJ88 424 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 DUX4L6P0CJ89 424 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 DUX4L7P0CJ90 424 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 PGAM2P15259 253 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 FAM3AP98173 230 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 TAF9Q16594 264 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 PDSS1Q5T2R2 415 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 GALNT11Q8NCW6 608 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 OR2M7Q8NG81 312 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 DCUN1D4Q92564 292 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 HDHD3Q9BSH5 251 aaPredicted RBP8.75□□□□□ -1.01
VPS53-220ENST00000576149 DNTTIP1Q9H147 329 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 BARX1Q9HBU1 254 aaPredicted RBP8.75□□□□□ -1.01
VPS53-220ENST00000576149 PRR13Q9NZ81 148 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 DUX4Q9UBX2 424 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 GPR160Q9UJ42 338 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 TECTAO75443 2155 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 IGKV3D-15A0A087WSY6 115 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 TEX13DA0A0J9YY54 714 aaPredicted RBP8.75□□□□□ -1.01
VPS53-220ENST00000576149 MPTX1A8MV57 137 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 F5H0A9 414 aaPredicted RBP8.75□□□□□ -1.01
VPS53-220ENST00000576149 LGALS8O00214 317 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 KCNAB3O43448 404 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 SMPD2O60906 423 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 GLAP06280 429 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 ECI1P42126 302 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 ZNF92Q03936 586 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 OR8B8Q15620 311 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 NRN1LQ496H8 165 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 PAN3Q58A45 887 aaKnown RBP8.75□□□□□ -1.01
VPS53-220ENST00000576149 TSPO2Q5TGU0 170 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 SIGLEC12Q96PQ1 595 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 FAM173AQ9BQD7 235 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 FAAP24Q9BTP7 215 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 ZNF703Q9H7S9 590 aaPredicted RBP8.75□□□□□ -1.01
VPS53-220ENST00000576149 FOXJ2Q9P0K8 574 aa8.75□□□□□ -1.01
VPS53-220ENST00000576149 CHTOPQ9Y3Y2 248 aaKnown RBP8.75□□□□□ -1.01
VPS53-220ENST00000576149 A0A1W2PNU3 283 aaPredicted RBP8.74□□□□□ -1.01
VPS53-220ENST00000576149 LNP1A1A4G5 178 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 F8VVB4 439 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 F8VWA3 439 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 PLATP00750 562 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 HOXD4P09016 255 aaPredicted RBP8.74□□□□□ -1.01
VPS53-220ENST00000576149 LYL1P12980 280 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 LHX2P50458 406 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 SNTB1Q13884 538 aaKnown RBP8.74□□□□□ -1.01
VPS53-220ENST00000576149 RRNAD1Q96FB5 475 aaKnown RBP8.74□□□□□ -1.01
VPS53-220ENST00000576149 PIK3IP1Q96FE7 263 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 OR10C1Q96KK4 312 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 GPR87Q9BY21 358 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 SHARPINQ9H0F6 387 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 DECR2Q9NUI1 292 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 AK3Q9UIJ7 227 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 ANXA10Q9UJ72 324 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 C14orf166Q9Y224 244 aaKnown RBP8.74□□□□□ -1.01
VPS53-220ENST00000576149 MYO7BQ6PIF6 2116 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 IGKV1-12A0A0C4DH73 117 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 FARS2O95363 451 aaKnown RBP8.74□□□□□ -1.01
VPS53-220ENST00000576149 IGKV1D-12P01611 117 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 DTYMKP23919 212 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 CHATP28329 748 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 PTGER4P35408 488 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 FUT6P51993 359 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 IL15RAQ13261 267 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 PLEKHN1Q494U1 663 aaPredicted RBP8.74□□□□□ -1.01
VPS53-220ENST00000576149 ABHD17BQ5VST6 288 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 PRSS54Q6PEW0 395 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 UNQ6126/PRO20091Q6UXV3 157 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 GLRX5Q86SX6 157 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 STOML3Q8TAV4 291 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 SPSB4Q96A44 273 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 C2orf50Q96LR7 162 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 MICU1Q9BPX6 476 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 ZNF2Q9BSG1 426 aaPredicted RBP8.74□□□□□ -1.01
VPS53-220ENST00000576149 LINC00470Q9BZP3 86 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 METTL8Q9H825 291 aaKnown RBP8.74□□□□□ -1.01
VPS53-220ENST00000576149 ZNF581Q9P0T4 197 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 SLC7A11Q9UPY5 501 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 SPEF1Q9Y4P9 236 aa8.74□□□□□ -1.01
VPS53-220ENST00000576149 C21orf140B9A014 251 aa8.73□□□□□ -1.01
VPS53-220ENST00000576149 XRCC2O43543 280 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms