RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 CREB3L1Q96BA8 519 aa12.36□□□□□ -0.43
VPS53-218ENST00000575207 SGK3Q96BR1 496 aa12.36□□□□□ -0.43
VPS53-218ENST00000575207 ABCG5Q9H222 651 aa12.36□□□□□ -0.43
VPS53-218ENST00000575207 SHISA3A0PJX4 238 aa12.35□□□□□ -0.43
VPS53-218ENST00000575207 CDC42EP2O14613 210 aa12.35□□□□□ -0.43
VPS53-218ENST00000575207 RRP9O43818 475 aaKnown RBP12.35□□□□□ -0.43
VPS53-218ENST00000575207 CNIH1O95406 144 aa12.35□□□□□ -0.43
VPS53-218ENST00000575207 SERPINA1P01009 418 aa12.35□□□□□ -0.43
VPS53-218ENST00000575207 HLA-DQA2P01906 255 aa12.35□□□□□ -0.43
VPS53-218ENST00000575207 TMEM11P17152 192 aa12.35□□□□□ -0.43
VPS53-218ENST00000575207 CFL1P23528 166 aaKnown RBP12.35□□□□□ -0.43
VPS53-218ENST00000575207 CASQ1P31415 396 aa12.35□□□□□ -0.43
VPS53-218ENST00000575207 GPM6AP51674 278 aa12.35□□□□□ -0.43
VPS53-218ENST00000575207 ST3GAL3Q11203 375 aa12.35□□□□□ -0.43
VPS53-218ENST00000575207 HES1Q14469 280 aa12.35□□□□□ -0.43
VPS53-218ENST00000575207 GTSCR1Q86UQ5 136 aa12.35□□□□□ -0.43
VPS53-218ENST00000575207 ZDHHC21Q8IVQ6 265 aa12.35□□□□□ -0.43
VPS53-218ENST00000575207 KCTD12Q96CX2 325 aaKnown RBP12.35□□□□□ -0.43
VPS53-218ENST00000575207 OR5B12Q96R08 314 aa12.35□□□□□ -0.43
VPS53-218ENST00000575207 KCNJ15Q99712 375 aa12.35□□□□□ -0.43
VPS53-218ENST00000575207 LINC01619G3V211 115 aa12.34□□□□□ -0.43
VPS53-218ENST00000575207 BUB1B-PAK6H3BSN5 160 aa12.34□□□□□ -0.43
VPS53-218ENST00000575207 RTL8CO15255 209 aa12.34□□□□□ -0.43
VPS53-218ENST00000575207 MMP23AO75900 390 aa12.34□□□□□ -0.43
VPS53-218ENST00000575207 IGF1P05019 195 aa12.34□□□□□ -0.43
VPS53-218ENST00000575207 ATF4P18848 351 aaPredicted RBP12.34□□□□□ -0.43
VPS53-218ENST00000575207 GPR4P46093 362 aa12.34□□□□□ -0.43
VPS53-218ENST00000575207 CRYBA2P53672 197 aa12.34□□□□□ -0.43
VPS53-218ENST00000575207 CBX1P83916 185 aa12.34□□□□□ -0.43
VPS53-218ENST00000575207 MEF2CQ06413 473 aaPredicted RBP12.34□□□□□ -0.43
VPS53-218ENST00000575207 EIF2B1Q14232 305 aaKnown RBP12.34□□□□□ -0.43
VPS53-218ENST00000575207 GDPD3Q7L5L3 318 aa12.34□□□□□ -0.43
VPS53-218ENST00000575207 ANKRD13BQ86YJ7 626 aa12.34□□□□□ -0.43
VPS53-218ENST00000575207 KLK15Q9H2R5 256 aa12.34□□□□□ -0.43
VPS53-218ENST00000575207 OR51I2Q9H344 312 aa12.34□□□□□ -0.43
VPS53-218ENST00000575207 IER3IP1Q9Y5U9 82 aa12.34□□□□□ -0.43
VPS53-218ENST00000575207 hADV38S2A0JD32 116 aa12.33□□□□□ -0.44
VPS53-218ENST00000575207 NDUFB2O95178 105 aa12.33□□□□□ -0.44
VPS53-218ENST00000575207 CST4P01036 141 aa12.33□□□□□ -0.44
VPS53-218ENST00000575207 RPS27P42677 84 aaKnown RBP12.33□□□□□ -0.44
VPS53-218ENST00000575207 TNFRSF9Q07011 255 aa12.33□□□□□ -0.44
VPS53-218ENST00000575207 HNF4GQ14541 408 aa12.33□□□□□ -0.44
VPS53-218ENST00000575207 TAF13Q15543 124 aa12.33□□□□□ -0.44
VPS53-218ENST00000575207 GFOD2Q3B7J2 385 aa12.33□□□□□ -0.44
VPS53-218ENST00000575207 TIGD4Q8IY51 512 aa12.33□□□□□ -0.44
VPS53-218ENST00000575207 ASCC1Q8N9N2 400 aaKnown RBP12.33□□□□□ -0.44
VPS53-218ENST00000575207 OR56B4Q8NH76 319 aa12.33□□□□□ -0.44
VPS53-218ENST00000575207 LZICQ8WZA0 190 aa12.33□□□□□ -0.44
VPS53-218ENST00000575207 AQP3Q92482 292 aa12.33□□□□□ -0.44
VPS53-218ENST00000575207 PIGCQ92535 297 aa12.33□□□□□ -0.44
VPS53-218ENST00000575207 HIST1H2AAQ96QV6 131 aa12.33□□□□□ -0.44
VPS53-218ENST00000575207 SCRT2Q9NQ03 307 aa12.33□□□□□ -0.44
VPS53-218ENST00000575207 TPSG1Q9NRR2 321 aa12.33□□□□□ -0.44
VPS53-218ENST00000575207 MRPL22Q9NWU5 206 aaKnown RBP12.33□□□□□ -0.44
VPS53-218ENST00000575207 OR14J1Q9UGF5 321 aa12.33□□□□□ -0.44
VPS53-218ENST00000575207 TRPC5OSA6NMA1 111 aa12.32□□□□□ -0.44
VPS53-218ENST00000575207 ANXA2P07355 339 aaKnown RBP12.32□□□□□ -0.44
VPS53-218ENST00000575207 VDAC1P21796 283 aa12.32□□□□□ -0.44
VPS53-218ENST00000575207 GNG3P63215 75 aa12.32□□□□□ -0.44
VPS53-218ENST00000575207 HLA-DRB5Q30154 266 aa12.32□□□□□ -0.44
VPS53-218ENST00000575207 PAGE3Q5JUK9 113 aa12.32□□□□□ -0.44
VPS53-218ENST00000575207 LINC00471Q8N535 108 aa12.32□□□□□ -0.44
VPS53-218ENST00000575207 POC1AQ8NBT0 407 aa12.32□□□□□ -0.44
VPS53-218ENST00000575207 PHLDA1Q8WV24 401 aaPredicted RBP12.32□□□□□ -0.44
VPS53-218ENST00000575207 UTP4Q969X6 686 aaKnown RBP12.32□□□□□ -0.44
VPS53-218ENST00000575207 ZNF488Q96MN9 340 aa12.32□□□□□ -0.44
VPS53-218ENST00000575207 GPX7Q96SL4 187 aaPredicted RBP12.32□□□□□ -0.44
VPS53-218ENST00000575207 OVOL2Q9BRP0 275 aa12.32□□□□□ -0.44
VPS53-218ENST00000575207 LIN7CQ9NUP9 197 aaKnown RBP12.32□□□□□ -0.44
VPS53-218ENST00000575207 NDE1Q9NXR1 346 aa12.32□□□□□ -0.44
VPS53-218ENST00000575207 ZNF580Q9UK33 172 aa12.32□□□□□ -0.44
VPS53-218ENST00000575207 BAG5Q9UL15 447 aa12.32□□□□□ -0.44
VPS53-218ENST00000575207 LINC00312Q9Y6C7 94 aa12.32□□□□□ -0.44
VPS53-218ENST00000575207 A0A0J9YWU9 116 aa12.31□□□□□ -0.44
VPS53-218ENST00000575207 ZNF732B4DXR9 585 aa12.31□□□□□ -0.44
VPS53-218ENST00000575207 H0Y980 276 aa12.31□□□□□ -0.44
VPS53-218ENST00000575207 TXNDC12O95881 172 aa12.31□□□□□ -0.44
VPS53-218ENST00000575207 IFNA8P32881 189 aa12.31□□□□□ -0.44
VPS53-218ENST00000575207 ZP1P60852 638 aa12.31□□□□□ -0.44
VPS53-218ENST00000575207 HAGHLQ6PII5 290 aaPredicted RBP12.31□□□□□ -0.44
VPS53-218ENST00000575207 BAIAP2L2Q6UXY1 529 aa12.31□□□□□ -0.44
VPS53-218ENST00000575207 TGIF2LXQ8IUE1 241 aa12.31□□□□□ -0.44
VPS53-218ENST00000575207 TRMT10AQ8TBZ6 339 aaKnown RBP12.31□□□□□ -0.44
VPS53-218ENST00000575207 HRASLS5Q96KN8 279 aa12.31□□□□□ -0.44
VPS53-218ENST00000575207 KCTD7Q96MP8 289 aa12.31□□□□□ -0.44
VPS53-218ENST00000575207 ELOVL1Q9BW60 279 aa12.31□□□□□ -0.44
VPS53-218ENST00000575207 ALX4Q9H161 411 aaPredicted RBP12.31□□□□□ -0.44
VPS53-218ENST00000575207 RABEP2Q9H5N1 569 aa12.31□□□□□ -0.44
VPS53-218ENST00000575207 PCDHB16Q9NRJ7 776 aa12.31□□□□□ -0.44
VPS53-218ENST00000575207 HMCN2Q8NDA2 5059 aa12.3□□□□□ -0.44
VPS53-218ENST00000575207 TLDC2A0PJX2 215 aa12.3□□□□□ -0.44
VPS53-218ENST00000575207 UBDO15205 165 aa12.3□□□□□ -0.44
VPS53-218ENST00000575207 ZNF737O75373 536 aa12.3□□□□□ -0.44
VPS53-218ENST00000575207 ACKR3P25106 362 aa12.3□□□□□ -0.44
VPS53-218ENST00000575207 CD34P28906 385 aa12.3□□□□□ -0.44
VPS53-218ENST00000575207 GDNFP39905 211 aa12.3□□□□□ -0.44
VPS53-218ENST00000575207 RPS6KA3P51812 740 aa12.3□□□□□ -0.44
VPS53-218ENST00000575207 FGD3Q5JSP0 725 aa12.3□□□□□ -0.44
VPS53-218ENST00000575207 OR52W1Q6IF63 320 aa12.3□□□□□ -0.44
VPS53-218ENST00000575207 DCXRQ7Z4W1 244 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms