RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 A6NLC8 198 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 KRBOX1C9JBD0 128 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 ZNF878C9JN71 531 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 G3V2T6 193 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 RNASEK-C17orf49H0YIS7 233 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 GNGT2O14610 69 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 EI24O14681 340 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 SLC16A6O15403 523 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 XRCC2O43543 280 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 RGS10O43665 173 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 SOX14O95416 240 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 TSPAN15O95858 294 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 ECDO95905 644 aaPredicted RBP5.51□□□□□ -1.53
VPS53-213ENST00000572334 C1QBP02746 253 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 SPARCP09486 303 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 RAB3AP20336 220 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 ACKR3P25106 362 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 RPL15P61313 204 aaKnown RBP5.51□□□□□ -1.53
VPS53-213ENST00000572334 KLRD1Q13241 179 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 PDCD1Q15116 288 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 HSD17B12Q53GQ0 312 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 FAM76BQ5HYJ3 339 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 CLVS2Q5SYC1 327 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 ATPAF1Q5TC12 328 aaPredicted RBP5.51□□□□□ -1.53
VPS53-213ENST00000572334 UBE2UQ5VVX9 321 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 METTL11BQ5VVY1 283 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 STEAP3Q658P3 488 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 STUMQ69YW2 141 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 XAF1Q6GPH4 301 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 HCP5Q6MZN7 132 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 BRICD5Q6PL45 260 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 METAP1DQ6UB28 335 aaPredicted RBP5.51□□□□□ -1.53
VPS53-213ENST00000572334 CYP2R1Q6VVX0 501 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 GDPGP1Q6ZNW5 385 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 VMO1Q7Z5L0 202 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 PNKDQ8N490 385 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 OR1M1Q8NGA1 313 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 C8orf46Q8TAG6 207 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 LRRC29Q8WV35 223 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 RNF133Q8WVZ7 376 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 ST8SIA4Q92187 359 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 REEP6Q96HR9 211 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 LYZL4Q96KX0 146 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 COPS4Q9BT78 406 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 ABHD6Q9BV23 337 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 TSSK6Q9BXA6 273 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 DGCR6LQ9BY27 220 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 WDR13Q9H1Z4 485 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 C16orf95Q9H693 158 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 MAGIXQ9H6Y5 334 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 CNTD2Q9H8S5 307 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 MED20Q9H944 212 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 TRIM36Q9NQ86 728 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 CENPMQ9NSP4 180 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 ZNRD1Q9P1U0 126 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 DNAJB9Q9UBS3 223 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 NOP16Q9Y3C1 178 aaKnown RBP5.51□□□□□ -1.53
VPS53-213ENST00000572334 RHBDD3Q9Y3P4 386 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 PCDHGB5Q9Y5G0 923 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 KPTNQ9Y664 436 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 KIAA2026Q5HYC2 2103 aa5.51□□□□□ -1.53
VPS53-213ENST00000572334 hCG_1807616A0A1W2PRN6 198 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 FAM183AA6NL82 134 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 TNFRSF11BO00300 401 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 CDIPTO14735 213 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 TBX1O43435 398 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 AIREO43918 545 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 ZNF780AO75290 641 aaPredicted RBP5.5□□□□□ -1.53
VPS53-213ENST00000572334 APOL3O95236 402 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 PAHP00439 452 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 CRYBA1P05813 215 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 MUC1P15941 1255 aaPredicted RBP5.5□□□□□ -1.53
VPS53-213ENST00000572334 PTBP1P26599 531 aaKnown RBP eCLIP5.5□□□□□ -1.534e-7■■■■■ 29.2
VPS53-213ENST00000572334 FMO3P31513 532 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 DCTDP32321 178 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 IFNGR2P38484 337 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 CX3CR1P49238 355 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 GSK3AP49840 483 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 ZNF121P58317 390 aaPredicted RBP5.5□□□□□ -1.53
VPS53-213ENST00000572334 SSTP61278 116 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 FLI1Q01543 452 aaPredicted RBP5.5□□□□□ -1.53
VPS53-213ENST00000572334 EIF2B1Q14232 305 aaKnown RBP5.5□□□□□ -1.53
VPS53-213ENST00000572334 GALEQ14376 348 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 MICAQ29983 383 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 HIST2H2BDQ6DRA6 164 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 RPL13AP3Q6NVV1 102 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 ZNF788Q6ZQV5 615 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 C17orf107Q6ZR85 190 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 FAM57BQ71RH2 274 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 KRT74Q7RTS7 529 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 DPY19L4Q7Z388 723 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 TIGD4Q8IY51 512 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 IQCF1Q8N6M8 205 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 LINC00469Q8N7U9 141 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 AQP11Q8NBQ7 271 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 OR52L1Q8NGH7 329 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 OR5K1Q8NHB7 308 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 HPSE2Q8WWQ2 592 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 YIPF6Q96EC8 236 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 DMRTB1Q96MA1 342 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms