RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 ZBTB9Q96C00 473 aa14.1□□□□□ -0.15
CLK3-227ENST00000570296 KRCC1Q9NPI7 259 aaPredicted RBP14.1□□□□□ -0.15
CLK3-227ENST00000570296 hADV38S2A0JD32 116 aa14.09□□□□□ -0.15
CLK3-227ENST00000570296 OR5B21A6NL26 309 aa14.09□□□□□ -0.15
CLK3-227ENST00000570296 FGF16O43320 207 aa14.09□□□□□ -0.15
CLK3-227ENST00000570296 CEACAM3P40198 252 aa14.09□□□□□ -0.15
CLK3-227ENST00000570296 FOXE3Q13461 319 aa14.09□□□□□ -0.15
CLK3-227ENST00000570296 CYLC2Q14093 348 aaPredicted RBP14.09□□□□□ -0.15
CLK3-227ENST00000570296 CEACAM21Q3KPI0 293 aa14.09□□□□□ -0.15
CLK3-227ENST00000570296 TEX30Q5JUR7 227 aa14.09□□□□□ -0.15
CLK3-227ENST00000570296 CCDC144NLQ6NUI1 221 aa14.09□□□□□ -0.15
CLK3-227ENST00000570296 LYPD4Q6UWN0 246 aa14.09□□□□□ -0.15
CLK3-227ENST00000570296 GDPD3Q7L5L3 318 aa14.09□□□□□ -0.15
CLK3-227ENST00000570296 KRT74Q7RTS7 529 aa14.09□□□□□ -0.15
CLK3-227ENST00000570296 RTN4RL2Q86UN3 420 aa14.09□□□□□ -0.15
CLK3-227ENST00000570296 OR8J3Q8NGG0 315 aa14.09□□□□□ -0.15
CLK3-227ENST00000570296 OR2T4Q8NH00 348 aa14.09□□□□□ -0.15
CLK3-227ENST00000570296 CREB3L1Q96BA8 519 aa14.09□□□□□ -0.15
CLK3-227ENST00000570296 PGAM5Q96HS1 289 aa14.09□□□□□ -0.15
CLK3-227ENST00000570296 ZNF488Q96MN9 340 aa14.09□□□□□ -0.15
CLK3-227ENST00000570296 IFT27Q9BW83 186 aa14.09□□□□□ -0.15
CLK3-227ENST00000570296 GON7Q9BXV9 100 aa14.09□□□□□ -0.15
CLK3-227ENST00000570296 TMBIM4Q9HC24 238 aa14.09□□□□□ -0.15
CLK3-227ENST00000570296 C19orf73Q9NVV2 129 aa14.09□□□□□ -0.15
CLK3-227ENST00000570296 OR14J1Q9UGF5 321 aa14.09□□□□□ -0.15
CLK3-227ENST00000570296 A0A1W2PRQ8 180 aa14.08□□□□□ -0.16
CLK3-227ENST00000570296 DHRS12A0PJE2 317 aa14.08□□□□□ -0.16
CLK3-227ENST00000570296 NOS1APO75052 506 aaPredicted RBP14.08□□□□□ -0.16
CLK3-227ENST00000570296 LY6G6CO95867 125 aa14.08□□□□□ -0.16
CLK3-227ENST00000570296 OR8U8P0C7N1 319 aa14.08□□□□□ -0.16
CLK3-227ENST00000570296 MNDAP41218 407 aa14.08□□□□□ -0.16
CLK3-227ENST00000570296 MTNR1BP49286 362 aa14.08□□□□□ -0.16
CLK3-227ENST00000570296 DGCR6Q14129 220 aa14.08□□□□□ -0.16
CLK3-227ENST00000570296 CYP4Z1Q86W10 505 aa14.08□□□□□ -0.16
CLK3-227ENST00000570296 THNSL2Q86YJ6 484 aa14.08□□□□□ -0.16
CLK3-227ENST00000570296 ABHD12Q8N2K0 398 aa14.08□□□□□ -0.16
CLK3-227ENST00000570296 ASCC1Q8N9N2 400 aaKnown RBP14.08□□□□□ -0.16
CLK3-227ENST00000570296 OR11H1Q8NG94 326 aa14.08□□□□□ -0.16
CLK3-227ENST00000570296 OR5A2Q8NGI9 324 aa14.08□□□□□ -0.16
CLK3-227ENST00000570296 OR52D1Q9H346 318 aa14.08□□□□□ -0.16
CLK3-227ENST00000570296 DNAJC27Q9NZQ0 273 aa14.08□□□□□ -0.16
CLK3-227ENST00000570296 LINC00312Q9Y6C7 94 aa14.08□□□□□ -0.16
CLK3-227ENST00000570296 TMEM120BA0PK00 339 aa14.07□□□□□ -0.16
CLK3-227ENST00000570296 OOSP1A8MZH6 123 aa14.07□□□□□ -0.16
CLK3-227ENST00000570296 NXPH2O95156 264 aa14.07□□□□□ -0.16
CLK3-227ENST00000570296 IGLV1-47P01700 117 aa14.07□□□□□ -0.16
CLK3-227ENST00000570296 ELANEP08246 267 aa14.07□□□□□ -0.16
CLK3-227ENST00000570296 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.07□□□□□ -0.16
CLK3-227ENST00000570296 GPR50Q13585 617 aa14.07□□□□□ -0.16
CLK3-227ENST00000570296 LYPD6Q86Y78 171 aa14.07□□□□□ -0.16
CLK3-227ENST00000570296 FAM86B1Q8N7N1 296 aa14.07□□□□□ -0.16
CLK3-227ENST00000570296 SLC22A13Q9Y226 551 aa14.07□□□□□ -0.16
CLK3-227ENST00000570296 ARRDC5A6NEK1 342 aa14.06□□□□□ -0.16
CLK3-227ENST00000570296 AP4M1O00189 453 aa14.06□□□□□ -0.16
CLK3-227ENST00000570296 ZNF593O00488 134 aaPredicted RBP14.06□□□□□ -0.16
CLK3-227ENST00000570296 ZNF737O75373 536 aa14.06□□□□□ -0.16
CLK3-227ENST00000570296 POU3F4P49335 361 aa14.06□□□□□ -0.16
CLK3-227ENST00000570296 SRSF7Q16629 238 aaKnown RBP eCLIP14.06□□□□□ -0.16
CLK3-227ENST00000570296 IFI44LQ53G44 452 aa14.06□□□□□ -0.16
CLK3-227ENST00000570296 CEP78Q5JTW2 689 aa14.06□□□□□ -0.16
CLK3-227ENST00000570296 TPTE2P1Q5T6R2 138 aa14.06□□□□□ -0.16
CLK3-227ENST00000570296 OR52W1Q6IF63 320 aa14.06□□□□□ -0.16
CLK3-227ENST00000570296 OR8H2Q8N162 312 aa14.06□□□□□ -0.16
CLK3-227ENST00000570296 OR6Q1Q8NGQ2 317 aa14.06□□□□□ -0.16
CLK3-227ENST00000570296 ZNRF4Q8WWF5 429 aa14.06□□□□□ -0.16
CLK3-227ENST00000570296 ST6GALNAC6Q969X2 333 aa14.06□□□□□ -0.16
CLK3-227ENST00000570296 C7orf26Q96N11 449 aa14.06□□□□□ -0.16
CLK3-227ENST00000570296 HES4Q9HCC6 221 aa14.06□□□□□ -0.16
CLK3-227ENST00000570296 BRD7Q9NPI1 651 aa14.06□□□□□ -0.16
CLK3-227ENST00000570296 FAM90A18PA6NE21 464 aa14.05□□□□□ -0.16
CLK3-227ENST00000570296 FAM90A16PA6NEW6 464 aa14.05□□□□□ -0.16
CLK3-227ENST00000570296 FAM90A20PA6NIJ5 464 aa14.05□□□□□ -0.16
CLK3-227ENST00000570296 FAM90A9PA6NNJ1 464 aa14.05□□□□□ -0.16
CLK3-227ENST00000570296 FAM90A12PA8MX19 464 aa14.05□□□□□ -0.16
CLK3-227ENST00000570296 FAM90A5PA8MXJ8 464 aa14.05□□□□□ -0.16
CLK3-227ENST00000570296 PSMD9O00233 223 aa14.05□□□□□ -0.16
CLK3-227ENST00000570296 SAP30O75446 220 aa14.05□□□□□ -0.16
CLK3-227ENST00000570296 H1F0P07305 194 aaKnown RBP14.05□□□□□ -0.16
CLK3-227ENST00000570296 FAM90A15PP0C7V4 464 aa14.05□□□□□ -0.16
CLK3-227ENST00000570296 FAM90A13PP0C7W8 464 aa14.05□□□□□ -0.16
CLK3-227ENST00000570296 FAM90A14PP0C7W9 464 aa14.05□□□□□ -0.16
CLK3-227ENST00000570296 FAM90A24PP0C7X0 464 aa14.05□□□□□ -0.16
CLK3-227ENST00000570296 FMO3P31513 532 aa14.05□□□□□ -0.16
CLK3-227ENST00000570296 MAGOHP61326 146 aaKnown RBP14.05□□□□□ -0.16
CLK3-227ENST00000570296 ESRRGP62508 458 aa14.05□□□□□ -0.16
CLK3-227ENST00000570296 LINC00471Q8N535 108 aa14.05□□□□□ -0.16
CLK3-227ENST00000570296 OR51L1Q8NGJ5 315 aa14.05□□□□□ -0.16
CLK3-227ENST00000570296 RNF133Q8WVZ7 376 aa14.05□□□□□ -0.16
CLK3-227ENST00000570296 POLDIP2Q9Y2S7 368 aa14.05□□□□□ -0.16
CLK3-227ENST00000570296 FAM220BPB1ANY3 271 aa14.04□□□□□ -0.16
CLK3-227ENST00000570296 LY6LH3BQJ8 138 aa14.04□□□□□ -0.16
CLK3-227ENST00000570296 J3QT63 122 aa14.04□□□□□ -0.16
CLK3-227ENST00000570296 DYNC1I1O14576 645 aa14.04□□□□□ -0.16
CLK3-227ENST00000570296 ATP8B1O43520 1251 aa14.04□□□□□ -0.16
CLK3-227ENST00000570296 MMP23AO75900 390 aa14.04□□□□□ -0.16
CLK3-227ENST00000570296 SERPINA1P01009 418 aa14.04□□□□□ -0.16
CLK3-227ENST00000570296 KIAA2026Q5HYC2 2103 aa14.04□□□□□ -0.16
CLK3-227ENST00000570296 SLC35F1Q5T1Q4 408 aa14.04□□□□□ -0.16
CLK3-227ENST00000570296 SGPP2Q8IWX5 399 aa14.04□□□□□ -0.16
CLK3-227ENST00000570296 FAM81AQ8TBF8 368 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms