RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 COX18Q8N8Q8 333 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 AMER3Q8N944 861 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 FADS6Q8N9I5 356 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 FER1L6-AS1Q8NA97 138 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 C9orf106Q8NAJ2 232 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 CHST4Q8NCG5 386 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 B3GNT7Q8NFL0 401 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 OR4B1Q8NGF8 309 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 OR52B4Q8NGK2 314 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 OR52E5Q8NH55 327 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 OR5K2Q8NHB8 316 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 NFKBIDQ8NI38 313 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 SFXN5Q8TD22 340 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 WIPF2Q8TF74 440 aaPredicted RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 SKA2Q8WVK7 121 aaPredicted RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 TNFAIP8L1Q8WVP5 186 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 IGFBPL1Q8WX77 278 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 DNASE2BQ8WZ79 361 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 RERGQ96A58 199 aaPredicted RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 LRRC58Q96CX6 371 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 RAB39BQ96DA2 213 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 PIK3IP1Q96FE7 263 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 ACY3Q96HD9 319 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 LMLNQ96KR4 655 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 KCTD7Q96MP8 289 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 GPR82Q96P67 336 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 CIB3Q96Q77 187 aaPredicted RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 OR4K3Q96R72 315 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 PEBP4Q96S96 227 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 FIZ1Q96SL8 496 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 TBX5Q99593 518 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 SEPHS2Q99611 448 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 SIGMAR1Q99720 223 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 NKX3-1Q99801 234 aaPredicted RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 ATF6BQ99941 703 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 MRPL57Q9BQC6 102 aaKnown RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 MRPL45Q9BRJ2 306 aaKnown RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 PAAF1Q9BRP4 392 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 RBM24Q9BX46 236 aaKnown RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 ZNF471Q9BX82 626 aaPredicted RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 OR52D1Q9H346 318 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 PLK3Q9H4B4 646 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 PLEKHA1Q9HB21 404 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 PATZ1Q9HBE1 687 aaKnown RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 CDH20Q9HBT6 801 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 SGK2Q9HBY8 427 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 APOBEC3GQ9HC16 384 aaKnown RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 A4GALTQ9NPC4 353 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 NOX4Q9NPH5 578 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 PXMP2Q9NR77 195 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 DMAC2Q9NW81 257 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 TXNL4BQ9NX01 149 aaKnown RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 TAS2R8Q9NYW2 309 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 TAS2R5Q9NYW4 299 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 SLC23A2Q9UGH3 650 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 NXT1Q9UKK6 140 aaKnown RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 LAMP3Q9UQV4 416 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 FARSAQ9Y285 508 aaKnown RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 LAMTOR2Q9Y2Q5 125 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 RNF115Q9Y4L5 304 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 ROBO1Q9Y6N7 1651 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 TSC2P49815 1807 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 ATG2AQ2TAZ0 1938 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 LOC102724200A0A096LPH7 203 aaPredicted RBP2.81□□□□□ -1.96
VPS35-208ENST00000568612 KIR2DS5A0A0G2JLQ3 304 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 A0A0J9YY10 115 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 A0A1B0GU03 582 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 A0A1B0GX78 115 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 FAM90A10PA6NDY2 464 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 OOEPA6NGQ2 149 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 SERINC4A6NH21 518 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 KIR2DS3K7RE56 304 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 GNGT2O14610 69 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 HSD17B6O14756 317 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 RAB29O14966 203 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 EEF1E1O43324 174 aaKnown RBP2.81□□□□□ -1.96
VPS35-208ENST00000568612 LATO43561 262 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 GSTZ1O43708 216 aaPredicted RBP2.81□□□□□ -1.96
VPS35-208ENST00000568612 FGF17O60258 216 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 UPK3AO75631 287 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 PROSCO94903 275 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 SEMA4FO95754 770 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 TMEM50AO95807 157 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 CD8AP01732 235 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 IGHG3P01860 377 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 EDN1P05305 212 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 CRYGBP07316 175 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 CTSDP07339 412 aaPredicted RBP2.81□□□□□ -1.96
VPS35-208ENST00000568612 CHRM4P08173 479 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 OR4Q2P0C623 313 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 MPC1LP0DKB6 136 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 CT45A8P0DMV1 189 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 CT45A9P0DMV2 189 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 SMIM10L2AP0DMW4 78 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 SMIM10L2BP0DMW5 78 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 TFPIP10646 304 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 FUT3P21217 361 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 GPX3P22352 226 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 SLC6A6P31641 620 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 GABRA3P34903 492 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms