RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 ERI1Q8IV48 349 aaKnown RBP12.77□□□□□ -0.37
CLK3-223ENST00000568488 OR4P4Q8NGL7 312 aa12.77□□□□□ -0.37
CLK3-223ENST00000568488 CHPT1Q8WUD6 406 aa12.77□□□□□ -0.37
CLK3-223ENST00000568488 SLC22A13Q9Y226 551 aa12.77□□□□□ -0.37
CLK3-223ENST00000568488 AP3M1Q9Y2T2 418 aa12.77□□□□□ -0.37
CLK3-223ENST00000568488 SERPINE3A8MV23 424 aa12.76□□□□□ -0.37
CLK3-223ENST00000568488 GADD45GO95257 159 aa12.76□□□□□ -0.37
CLK3-223ENST00000568488 SPI1P17947 270 aa12.76□□□□□ -0.37
CLK3-223ENST00000568488 IFNGR2P38484 337 aa12.76□□□□□ -0.37
CLK3-223ENST00000568488 OPRL1P41146 370 aa12.76□□□□□ -0.37
CLK3-223ENST00000568488 MAP2K3P46734 347 aa12.76□□□□□ -0.37
CLK3-223ENST00000568488 HAAOP46952 286 aa12.76□□□□□ -0.37
CLK3-223ENST00000568488 SLC35B1P78383 322 aa12.76□□□□□ -0.37
CLK3-223ENST00000568488 CRMP1Q14194 572 aa12.76□□□□□ -0.37
CLK3-223ENST00000568488 EDDM3AQ14507 147 aa12.76□□□□□ -0.37
CLK3-223ENST00000568488 MAPRE2Q15555 327 aa12.76□□□□□ -0.37
CLK3-223ENST00000568488 LCNL1Q6ZST4 164 aa12.76□□□□□ -0.37
CLK3-223ENST00000568488 SLC15A3Q8IY34 581 aa12.76□□□□□ -0.37
CLK3-223ENST00000568488 GNPDA2Q8TDQ7 276 aa12.76□□□□□ -0.37
CLK3-223ENST00000568488 C7orf34Q96L11 122 aa12.76□□□□□ -0.37
CLK3-223ENST00000568488 DHRS1Q96LJ7 313 aa12.76□□□□□ -0.37
CLK3-223ENST00000568488 LYVE1Q9Y5Y7 322 aa12.76□□□□□ -0.37
CLK3-223ENST00000568488 hADV38S2A0JD32 116 aa12.75□□□□□ -0.37
CLK3-223ENST00000568488 GSSP48637 474 aa12.75□□□□□ -0.37
CLK3-223ENST00000568488 NUDT2P50583 147 aa12.75□□□□□ -0.37
CLK3-223ENST00000568488 SMIM11AP58511 58 aa12.75□□□□□ -0.37
CLK3-223ENST00000568488 OR8B12Q8NGG6 310 aa12.75□□□□□ -0.37
CLK3-223ENST00000568488 OR4Q3Q8NH05 313 aa12.75□□□□□ -0.37
CLK3-223ENST00000568488 ISOC1Q96CN7 298 aa12.75□□□□□ -0.37
CLK3-223ENST00000568488 INTS14Q96SY0 518 aa12.75□□□□□ -0.37
CLK3-223ENST00000568488 NRIP2Q9BQI9 281 aa12.75□□□□□ -0.37
CLK3-223ENST00000568488 LEUTXA8MZ59 168 aa12.74□□□□□ -0.37
CLK3-223ENST00000568488 JTBO76095 146 aa12.74□□□□□ -0.37
CLK3-223ENST00000568488 FRMD6-AS1P0C7T7 363 aa12.74□□□□□ -0.37
CLK3-223ENST00000568488 BLVRAP53004 296 aa12.74□□□□□ -0.37
CLK3-223ENST00000568488 MEF2CQ06413 473 aaPredicted RBP12.74□□□□□ -0.37
CLK3-223ENST00000568488 TSPAN31Q12999 210 aa12.74□□□□□ -0.37
CLK3-223ENST00000568488 TCF23Q7RTU1 214 aa12.74□□□□□ -0.37
CLK3-223ENST00000568488 COMMD2Q86X83 199 aa12.74□□□□□ -0.37
CLK3-223ENST00000568488 ZNF573Q86YE8 665 aa12.74□□□□□ -0.37
CLK3-223ENST00000568488 ABHD12Q8N2K0 398 aa12.74□□□□□ -0.37
CLK3-223ENST00000568488 TPRX1Q8N7U7 411 aa12.74□□□□□ -0.37
CLK3-223ENST00000568488 OR8U1Q8NH10 309 aa12.74□□□□□ -0.37
CLK3-223ENST00000568488 DCLRE1BQ9H816 532 aa12.74□□□□□ -0.37
CLK3-223ENST00000568488 HHLA2Q9UM44 414 aa12.74□□□□□ -0.37
CLK3-223ENST00000568488 MOB4Q9Y3A3 225 aa12.74□□□□□ -0.37
CLK3-223ENST00000568488 CDH10Q9Y6N8 788 aa12.74□□□□□ -0.37
CLK3-223ENST00000568488 HSPE1-MOB4S4R3N1 261 aa12.74□□□□□ -0.37
CLK3-223ENST00000568488 FAM172BPA6NC97 362 aa12.73□□□□□ -0.37
CLK3-223ENST00000568488 J3QT63 122 aa12.73□□□□□ -0.37
CLK3-223ENST00000568488 GSC2O15499 205 aa12.73□□□□□ -0.37
CLK3-223ENST00000568488 NOS1APO75052 506 aaPredicted RBP12.73□□□□□ -0.37
CLK3-223ENST00000568488 MMP23AO75900 390 aa12.73□□□□□ -0.37
CLK3-223ENST00000568488 SHFQ7M4L6 423 aa12.73□□□□□ -0.37
CLK3-223ENST00000568488 ARPINQ7Z6K5 226 aa12.73□□□□□ -0.37
CLK3-223ENST00000568488 COMMD1Q8N668 190 aa12.73□□□□□ -0.37
CLK3-223ENST00000568488 TRMT10AQ8TBZ6 339 aaKnown RBP12.73□□□□□ -0.37
CLK3-223ENST00000568488 ZNF596Q8TC21 504 aa12.73□□□□□ -0.37
CLK3-223ENST00000568488 THEM6Q8WUY1 208 aa12.73□□□□□ -0.37
CLK3-223ENST00000568488 RCN3Q96D15 328 aa12.73□□□□□ -0.37
CLK3-223ENST00000568488 NMNAT2Q9BZQ4 307 aa12.73□□□□□ -0.37
CLK3-223ENST00000568488 NIPAL2Q9H841 368 aa12.73□□□□□ -0.37
CLK3-223ENST00000568488 RAB21Q9UL25 225 aa12.73□□□□□ -0.37
CLK3-223ENST00000568488 POLDIP2Q9Y2S7 368 aa12.73□□□□□ -0.37
CLK3-223ENST00000568488 V9GYQ6 96 aa12.73□□□□□ -0.37
CLK3-223ENST00000568488 HERC2O95714 4834 aa12.72□□□□□ -0.37
CLK3-223ENST00000568488 ARRDC5A6NEK1 342 aa12.72□□□□□ -0.37
CLK3-223ENST00000568488 PSMD9O00233 223 aa12.72□□□□□ -0.37
CLK3-223ENST00000568488 NME4O00746 187 aa12.72□□□□□ -0.37
CLK3-223ENST00000568488 ZNF737O75373 536 aa12.72□□□□□ -0.37
CLK3-223ENST00000568488 SASH3O75995 380 aa12.72□□□□□ -0.37
CLK3-223ENST00000568488 RPLP1P05386 114 aaKnown RBP12.72□□□□□ -0.37
CLK3-223ENST00000568488 FAM106CPP0CH98 169 aa12.72□□□□□ -0.37
CLK3-223ENST00000568488 GSTT1P30711 240 aa12.72□□□□□ -0.37
CLK3-223ENST00000568488 MNDAP41218 407 aa12.72□□□□□ -0.37
CLK3-223ENST00000568488 RIPPLY1Q0D2K3 151 aa12.72□□□□□ -0.37
CLK3-223ENST00000568488 ZNF684Q5T5D7 378 aa12.72□□□□□ -0.37
CLK3-223ENST00000568488 LINC01590Q5TEZ4 76 aa12.72□□□□□ -0.37
CLK3-223ENST00000568488 RPL13AP3Q6NVV1 102 aa12.72□□□□□ -0.37
CLK3-223ENST00000568488 BAIAP2L2Q6UXY1 529 aa12.72□□□□□ -0.37
CLK3-223ENST00000568488 TRAPPC6BQ86SZ2 158 aa12.72□□□□□ -0.37
CLK3-223ENST00000568488 EGFL6Q8IUX8 553 aa12.72□□□□□ -0.37
CLK3-223ENST00000568488 RP9Q8TA86 221 aaKnown RBP12.72□□□□□ -0.37
CLK3-223ENST00000568488 OTULINQ96BN8 352 aa12.72□□□□□ -0.37
CLK3-223ENST00000568488 PIGLQ9Y2B2 252 aa12.72□□□□□ -0.37
CLK3-223ENST00000568488 LINC00312Q9Y6C7 94 aa12.72□□□□□ -0.37
CLK3-223ENST00000568488 NRASP01111 189 aa12.71□□□□□ -0.37
CLK3-223ENST00000568488 LYNP07948 512 aa12.71□□□□□ -0.37
CLK3-223ENST00000568488 H2AFXP16104 143 aaPredicted RBP12.71□□□□□ -0.37
CLK3-223ENST00000568488 BDH1Q02338 343 aa12.71□□□□□ -0.37
CLK3-223ENST00000568488 SF3A3Q12874 501 aaKnown RBP eCLIP12.71□□□□□ -0.371e-6■■■■■ 38.4
CLK3-223ENST00000568488 KIR2DS1Q14954 304 aa12.71□□□□□ -0.37
CLK3-223ENST00000568488 FAM27D1Q5T7N8 215 aa12.71□□□□□ -0.37
CLK3-223ENST00000568488 TEX38Q6PEX7 206 aa12.71□□□□□ -0.37
CLK3-223ENST00000568488 ASRGL1Q7L266 308 aa12.71□□□□□ -0.37
CLK3-223ENST00000568488 SLC35E3Q7Z769 313 aa12.71□□□□□ -0.37
CLK3-223ENST00000568488 OR8H2Q8N162 312 aa12.71□□□□□ -0.37
CLK3-223ENST00000568488 OR8D4Q8NGM9 314 aa12.71□□□□□ -0.37
CLK3-223ENST00000568488 KCTD14Q9BQ13 255 aaPredicted RBP12.71□□□□□ -0.37
CLK3-223ENST00000568488 SIKE1Q9BRV8 207 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms