RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 BRICD5Q6PL45 260 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 ALKAL2Q6UX46 152 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 OR10AD1Q8NGE0 317 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 DYRK2Q92630 601 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 FGF23Q9GZV9 251 aaPredicted RBP17.51■□□□□ 0.39
CLN3-230ENST00000568076 C12orf49Q9H741 205 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 ZDHHC11Q9H8X9 412 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 OTOGLQ3ZCN5 2332 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 TRGV5A0A0B4J1U4 118 aa17.5■□□□□ 0.39
CLN3-230ENST00000568076 EEF1E1-BLOC1S5C9J1V9 151 aa17.5■□□□□ 0.39
CLN3-230ENST00000568076 AGTR1P30556 359 aa17.5■□□□□ 0.39
CLN3-230ENST00000568076 RRADP55042 308 aa17.5■□□□□ 0.39
CLN3-230ENST00000568076 RAB14P61106 215 aa17.5■□□□□ 0.39
CLN3-230ENST00000568076 DAZAP2Q15038 168 aaPredicted RBP17.5■□□□□ 0.39
CLN3-230ENST00000568076 OR6K3Q8NGY3 331 aa17.5■□□□□ 0.39
CLN3-230ENST00000568076 OR51F2Q8NH61 342 aa17.5■□□□□ 0.39
CLN3-230ENST00000568076 POM121L2Q96KW2 1035 aa17.5■□□□□ 0.39
CLN3-230ENST00000568076 TECTBQ96PL2 329 aa17.5■□□□□ 0.39
CLN3-230ENST00000568076 ASCL3Q9NQ33 180 aa17.5■□□□□ 0.39
CLN3-230ENST00000568076 COMMD9Q9P000 198 aa17.5■□□□□ 0.39
CLN3-230ENST00000568076 TNFSF18Q9UNG2 199 aa17.5■□□□□ 0.39
CLN3-230ENST00000568076 RRP8O43159 456 aaKnown RBP17.49■□□□□ 0.39
CLN3-230ENST00000568076 SS18L1O75177 396 aaPredicted RBP17.49■□□□□ 0.39
CLN3-230ENST00000568076 RPS2P15880 293 aaKnown RBP17.49■□□□□ 0.39
CLN3-230ENST00000568076 SERPINF1P36955 418 aa17.49■□□□□ 0.39
CLN3-230ENST00000568076 PMP22Q01453 160 aa17.49■□□□□ 0.39
CLN3-230ENST00000568076 PDCD1Q15116 288 aa17.49■□□□□ 0.39
CLN3-230ENST00000568076 ZNF660Q6AZW8 331 aaPredicted RBP17.49■□□□□ 0.39
CLN3-230ENST00000568076 COMMD7Q86VX2 200 aa17.49■□□□□ 0.39
CLN3-230ENST00000568076 SCGB3A2Q96PL1 93 aa17.49■□□□□ 0.39
CLN3-230ENST00000568076 RDH8Q9NYR8 311 aa17.49■□□□□ 0.39
CLN3-230ENST00000568076 ANXA10Q9UJ72 324 aa17.49■□□□□ 0.39
CLN3-230ENST00000568076 ST3GAL6Q9Y274 331 aa17.49■□□□□ 0.39
CLN3-230ENST00000568076 STARD10Q9Y365 291 aa17.49■□□□□ 0.39
CLN3-230ENST00000568076 IL18BPO95998 194 aa17.49■□□□□ 0.39
CLN3-230ENST00000568076 NGFP01138 241 aa17.49■□□□□ 0.39
CLN3-230ENST00000568076 TNFSF10P50591 281 aa17.49■□□□□ 0.39
CLN3-230ENST00000568076 ANKRD55Q3KP44 614 aa17.49■□□□□ 0.39
CLN3-230ENST00000568076 THOC7Q6I9Y2 204 aaKnown RBP17.49■□□□□ 0.39
CLN3-230ENST00000568076 TMEM178AQ8NBL3 297 aa17.49■□□□□ 0.39
CLN3-230ENST00000568076 MICU1Q9BPX6 476 aa17.49■□□□□ 0.39
CLN3-230ENST00000568076 CMSS1Q9BQ75 279 aaKnown RBP17.49■□□□□ 0.39
CLN3-230ENST00000568076 PAPOLGQ9BWT3 736 aaKnown RBP17.49■□□□□ 0.39
CLN3-230ENST00000568076 TUBAL3A6NHL2 446 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 FCGR3AP08637 254 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 OPRM1P35372 400 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 ARR3P36575 388 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 P2RX3P56373 397 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 NSUN5P2Q63ZY6 315 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 BATF2Q8N1L9 274 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 ZNF611Q8N823 705 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 MRPS24Q96EL2 167 aaKnown RBP17.48■□□□□ 0.39
CLN3-230ENST00000568076 KIF25Q9UIL4 384 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 EDARQ9UNE0 448 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 C13orf42A0A1B0GVH6 325 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 PQLC2LA1A4F0 135 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 RNF222A6NCQ9 220 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 C5orf51A6NDU8 294 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 RRASP10301 218 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 WT1P19544 449 aaPredicted RBP17.48■□□□□ 0.39
CLN3-230ENST00000568076 CALCRP30988 508 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 NPBWR2P48146 333 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 ARPC4P59998 168 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 ATXN7L3Q14CW9 347 aaPredicted RBP17.48■□□□□ 0.39
CLN3-230ENST00000568076 HIKESHIQ53FT3 197 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 SLC25A26Q70HW3 274 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 KCNRGQ8N5I3 272 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 HPSE2Q8WWQ2 592 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 APOBEC3DQ96AK3 386 aaPredicted RBP17.48■□□□□ 0.39
CLN3-230ENST00000568076 ZNF2Q9BSG1 426 aaPredicted RBP17.48■□□□□ 0.39
CLN3-230ENST00000568076 WDR13Q9H1Z4 485 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 LIME1Q9H400 295 aa17.48■□□□□ 0.39
CLN3-230ENST00000568076 ZNF629Q9UEG4 869 aaPredicted RBP17.48■□□□□ 0.39
CLN3-230ENST00000568076 ARHGAP21Q5T5U3 1957 aa17.47■□□□□ 0.39
CLN3-230ENST00000568076 SLC22A20A6NK97 555 aa17.47■□□□□ 0.39
CLN3-230ENST00000568076 ADAP1O75689 374 aa17.47■□□□□ 0.39
CLN3-230ENST00000568076 DTYMKP23919 212 aa17.47■□□□□ 0.39
CLN3-230ENST00000568076 RBM11P57052 281 aaKnown RBP17.47■□□□□ 0.39
CLN3-230ENST00000568076 PRDX4Q13162 271 aa17.47■□□□□ 0.39
CLN3-230ENST00000568076 SURF2Q15527 256 aaPredicted RBP17.47■□□□□ 0.39
CLN3-230ENST00000568076 TOR2AQ5JU69 321 aa17.47■□□□□ 0.39
CLN3-230ENST00000568076 MRPL21Q7Z2W9 205 aaKnown RBP17.47■□□□□ 0.39
CLN3-230ENST00000568076 SLC51BQ86UW2 128 aa17.47■□□□□ 0.39
CLN3-230ENST00000568076 SCARB1Q8WTV0 552 aa17.47■□□□□ 0.39
CLN3-230ENST00000568076 WBP1Q96G27 269 aa17.47■□□□□ 0.39
CLN3-230ENST00000568076 A0A0B4J2A0 478 aa17.46■□□□□ 0.39
CLN3-230ENST00000568076 A0A0D9SG52 128 aa17.46■□□□□ 0.39
CLN3-230ENST00000568076 CRHP06850 196 aa17.46■□□□□ 0.39
CLN3-230ENST00000568076 CCL11P51671 97 aa17.46■□□□□ 0.39
CLN3-230ENST00000568076 ZNF345Q14585 488 aa17.46■□□□□ 0.39
CLN3-230ENST00000568076 RFPL4BQ6ZWI9 263 aa17.46■□□□□ 0.39
CLN3-230ENST00000568076 FDCSPQ8NFU4 85 aa17.46■□□□□ 0.39
CLN3-230ENST00000568076 OR1K1Q8NGR3 316 aa17.46■□□□□ 0.39
CLN3-230ENST00000568076 SHPKQ9UHJ6 478 aa17.46■□□□□ 0.39
CLN3-230ENST00000568076 FAM221AA4D161 298 aa17.46■□□□□ 0.39
CLN3-230ENST00000568076 MPTX1A8MV57 137 aa17.46■□□□□ 0.39
CLN3-230ENST00000568076 SPDEFO95238 335 aa17.46■□□□□ 0.39
CLN3-230ENST00000568076 NMBP08949 121 aa17.46■□□□□ 0.39
CLN3-230ENST00000568076 MALLQ13021 153 aa17.46■□□□□ 0.39
CLN3-230ENST00000568076 FBXW9Q5XUX1 488 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms