RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 A0A1W2PPE2 198 aa13.06□□□□□ -0.32
CLN3-229ENST00000567963 A0A1W2PR64 198 aa13.06□□□□□ -0.32
CLN3-229ENST00000567963 A0A1W2PRV1 198 aa13.06□□□□□ -0.32
CLN3-229ENST00000567963 ZAR1LA6NP61 321 aa13.06□□□□□ -0.32
CLN3-229ENST00000567963 ZNF670-ZNF695F2Z2N8 137 aa13.06□□□□□ -0.32
CLN3-229ENST00000567963 G3V2T6 193 aa13.06□□□□□ -0.32
CLN3-229ENST00000567963 TK1P04183 234 aa13.06□□□□□ -0.32
CLN3-229ENST00000567963 MPZP25189 248 aa13.06□□□□□ -0.32
CLN3-229ENST00000567963 PAX6P26367 422 aa13.06□□□□□ -0.32
CLN3-229ENST00000567963 KIR2DS4P43632 304 aa13.06□□□□□ -0.32
CLN3-229ENST00000567963 ERVK11-1P61568 191 aa13.06□□□□□ -0.32
CLN3-229ENST00000567963 C12orf73Q69YU5 71 aa13.06□□□□□ -0.32
CLN3-229ENST00000567963 CALHM1Q8IU99 346 aa13.06□□□□□ -0.32
CLN3-229ENST00000567963 BATF2Q8N1L9 274 aa13.06□□□□□ -0.32
CLN3-229ENST00000567963 IL4I1Q96RQ9 567 aa13.06□□□□□ -0.32
CLN3-229ENST00000567963 CADM1Q9BY67 442 aaKnown RBP13.06□□□□□ -0.32
CLN3-229ENST00000567963 USE1Q9NZ43 259 aa13.06□□□□□ -0.32
CLN3-229ENST00000567963 OR14J1Q9UGF5 321 aa13.06□□□□□ -0.32
CLN3-229ENST00000567963 SLC22A13Q9Y226 551 aa13.06□□□□□ -0.32
CLN3-229ENST00000567963 SIGLEC9Q9Y336 463 aa13.06□□□□□ -0.32
CLN3-229ENST00000567963 CCL3L1P16619 93 aa13.05□□□□□ -0.32
CLN3-229ENST00000567963 CCL1P22362 96 aa13.05□□□□□ -0.32
CLN3-229ENST00000567963 EFNB2P52799 333 aa13.05□□□□□ -0.32
CLN3-229ENST00000567963 ZNF273Q14593 569 aa13.05□□□□□ -0.32
CLN3-229ENST00000567963 ATP6AP1Q15904 470 aa13.05□□□□□ -0.32
CLN3-229ENST00000567963 KDM4DQ6B0I6 523 aa13.05□□□□□ -0.32
CLN3-229ENST00000567963 SSX6Q7RTT6 188 aa13.05□□□□□ -0.32
CLN3-229ENST00000567963 ANGPTL5Q86XS5 388 aa13.05□□□□□ -0.32
CLN3-229ENST00000567963 PIFOQ8TCI5 191 aa13.05□□□□□ -0.32
CLN3-229ENST00000567963 RAB18Q9NP72 206 aa13.05□□□□□ -0.32
CLN3-229ENST00000567963 RPP14O95059 124 aaKnown RBP13.04□□□□□ -0.32
CLN3-229ENST00000567963 CSF1P09603 554 aa13.04□□□□□ -0.32
CLN3-229ENST00000567963 BMXP51813 675 aa13.04□□□□□ -0.32
CLN3-229ENST00000567963 LGALS4P56470 323 aa13.04□□□□□ -0.32
CLN3-229ENST00000567963 IL24Q13007 206 aa13.04□□□□□ -0.32
CLN3-229ENST00000567963 HERPUD1Q15011 391 aa13.04□□□□□ -0.32
CLN3-229ENST00000567963 C11orf88Q6PI97 169 aa13.04□□□□□ -0.32
CLN3-229ENST00000567963 Q6ZTK2 550 aa13.04□□□□□ -0.32
CLN3-229ENST00000567963 GID4Q8IVV7 300 aa13.04□□□□□ -0.32
CLN3-229ENST00000567963 PKIBQ9C010 78 aa13.04□□□□□ -0.32
CLN3-229ENST00000567963 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.04□□□□□ -0.32
CLN3-229ENST00000567963 MEGF11A6BM72 1044 aa13.04□□□□□ -0.32
CLN3-229ENST00000567963 C17orf98A8MV24 154 aa13.04□□□□□ -0.32
CLN3-229ENST00000567963 K7N7A8 449 aa13.04□□□□□ -0.32
CLN3-229ENST00000567963 COX7A1P24310 79 aa13.04□□□□□ -0.32
CLN3-229ENST00000567963 ODF4Q2M2E3 257 aa13.04□□□□□ -0.32
CLN3-229ENST00000567963 ZDHHC13Q8IUH4 622 aa13.04□□□□□ -0.32
CLN3-229ENST00000567963 YIPF7Q8N8F6 280 aa13.04□□□□□ -0.32
CLN3-229ENST00000567963 OR4C13Q8NGP0 309 aa13.04□□□□□ -0.32
CLN3-229ENST00000567963 TRMT10AQ8TBZ6 339 aaKnown RBP13.04□□□□□ -0.32
CLN3-229ENST00000567963 TBX5Q99593 518 aa13.04□□□□□ -0.32
CLN3-229ENST00000567963 RANBP3Q9H6Z4 567 aaPredicted RBP13.04□□□□□ -0.32
CLN3-229ENST00000567963 WARS2Q9UGM6 360 aaKnown RBP13.04□□□□□ -0.32
CLN3-229ENST00000567963 FAM230AA0A1W2PPH8 454 aa13.03□□□□□ -0.32
CLN3-229ENST00000567963 A0A1W2PQL4 384 aaPredicted RBP13.03□□□□□ -0.32
CLN3-229ENST00000567963 FAM90A8PA6NJQ4 464 aa13.03□□□□□ -0.32
CLN3-229ENST00000567963 KRT8P05787 483 aa13.03□□□□□ -0.32
CLN3-229ENST00000567963 OR2T7P0C7T2 308 aa13.03□□□□□ -0.32
CLN3-229ENST00000567963 PIPP12273 146 aaPredicted RBP13.03□□□□□ -0.32
CLN3-229ENST00000567963 FASP25445 335 aa13.03□□□□□ -0.32
CLN3-229ENST00000567963 DLX6P56179 175 aa13.03□□□□□ -0.32
CLN3-229ENST00000567963 COL10A1Q03692 680 aa13.03□□□□□ -0.32
CLN3-229ENST00000567963 UBE2V2Q15819 145 aa13.03□□□□□ -0.32
CLN3-229ENST00000567963 ZNF782Q6ZMW2 699 aaPredicted RBP13.03□□□□□ -0.32
CLN3-229ENST00000567963 LIAT1Q6ZQX7 453 aa13.03□□□□□ -0.32
CLN3-229ENST00000567963 LHFPL4Q7Z7J7 247 aa13.03□□□□□ -0.32
CLN3-229ENST00000567963 CATSPERDQ86XM0 798 aa13.03□□□□□ -0.32
CLN3-229ENST00000567963 C1QL4Q86Z23 238 aa13.03□□□□□ -0.32
CLN3-229ENST00000567963 OR2T6Q8NHC8 308 aa13.03□□□□□ -0.32
CLN3-229ENST00000567963 GABARAPL1Q9H0R8 117 aa13.03□□□□□ -0.32
CLN3-229ENST00000567963 MTCH1Q9NZJ7 389 aa13.03□□□□□ -0.32
CLN3-229ENST00000567963 ENOPH1Q9UHY7 261 aa13.03□□□□□ -0.32
CLN3-229ENST00000567963 FOXJ3Q9UPW0 622 aa13.03□□□□□ -0.32
CLN3-229ENST00000567963 SLC7A11Q9UPY5 501 aa13.03□□□□□ -0.32
CLN3-229ENST00000567963 VGLL3A8MV65 326 aa13.02□□□□□ -0.33
CLN3-229ENST00000567963 F8VVB4 439 aa13.02□□□□□ -0.33
CLN3-229ENST00000567963 F8VWA3 439 aa13.02□□□□□ -0.33
CLN3-229ENST00000567963 H3BSH0 61 aa13.02□□□□□ -0.33
CLN3-229ENST00000567963 SYT7O43581 403 aa13.02□□□□□ -0.33
CLN3-229ENST00000567963 CHST1O43916 411 aa13.02□□□□□ -0.33
CLN3-229ENST00000567963 ZNF737O75373 536 aa13.02□□□□□ -0.33
CLN3-229ENST00000567963 CHRM2P08172 466 aa13.02□□□□□ -0.33
CLN3-229ENST00000567963 DYNAPQ8N1N2 210 aa13.02□□□□□ -0.33
CLN3-229ENST00000567963 ASCC1Q8N9N2 400 aaKnown RBP13.02□□□□□ -0.33
CLN3-229ENST00000567963 CFHR4Q92496 578 aa13.02□□□□□ -0.33
CLN3-229ENST00000567963 NPFFR1Q9GZQ6 430 aa13.02□□□□□ -0.33
CLN3-229ENST00000567963 PLEKHA1Q9HB21 404 aa13.02□□□□□ -0.33
CLN3-229ENST00000567963 AP4S1Q9Y587 144 aa13.02□□□□□ -0.33
CLN3-229ENST00000567963 DSCAML1Q8TD84 2053 aa13.01□□□□□ -0.33
CLN3-229ENST00000567963 IGKV1-27A0A075B6S5 117 aa13.01□□□□□ -0.33
CLN3-229ENST00000567963 A0A0G2JK05 382 aa13.01□□□□□ -0.33
CLN3-229ENST00000567963 METTL15A6NJ78 407 aa13.01□□□□□ -0.33
CLN3-229ENST00000567963 SULT1C4O75897 302 aa13.01□□□□□ -0.33
CLN3-229ENST00000567963 HTR1FP30939 366 aa13.01□□□□□ -0.33
CLN3-229ENST00000567963 POLR2IP36954 125 aaKnown RBP13.01□□□□□ -0.33
CLN3-229ENST00000567963 FUT6P51993 359 aa13.01□□□□□ -0.33
CLN3-229ENST00000567963 BNIP1Q12981 228 aa13.01□□□□□ -0.33
CLN3-229ENST00000567963 HIST2H2BDQ6DRA6 164 aa13.01□□□□□ -0.33
CLN3-229ENST00000567963 AMIGO2Q86SJ2 522 aa13.01□□□□□ -0.33
CLN3-229ENST00000567963 KLHDC1Q8N7A1 406 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 115.7 ms